Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 6.8e-139 497.3 243 100.0
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 7.1e-112 407.5 243 82.3
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 1.6e-111 406.4 243 82.3
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.8e-106 387.9 244 80.3
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.9e-105 385.6 243 78.2
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 4.9e-105 384.8 245 80.0
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 5.4e-104 381.3 228 81.1
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.1e-104 380.9 239 78.7
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.7e-103 379.0 239 78.2
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 4.6e-103 378.3 240 77.5
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 7.8e-103 377.5 243 77.8
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 9.6e-101 370.5 239 77.0
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.2e-100 370.2 243 75.3
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 2.1e-100 369.4 237 75.9
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 6.2e-100 367.9 239 74.5
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 8.1e-100 367.5 243 75.3
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 1.5e-98 363.2 245 74.3
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.6e-98 362.5 243 73.3
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.6e-98 362.5 243 73.3
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 4.4e-98 361.7 219 80.8
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 5.8e-98 361.3 244 74.6
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 9.9e-98 360.5 239 75.3
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.8e-97 358.6 213 83.1
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 3.8e-97 358.6 237 73.8
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 4.9e-97 358.2 243 72.0
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.9e-97 358.2 235 76.6
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 8.4e-97 357.5 238 74.4
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 8.4e-97 357.5 228 76.8
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.4e-96 356.7 235 76.2
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 1.4e-96 356.7 239 74.9
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 3.2e-96 355.5 245 75.1
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 3.2e-96 355.5 228 78.1
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 3.2e-96 355.5 250 71.6
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 5.4e-96 354.8 237 76.4
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 5.4e-96 354.8 233 73.8
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 7.1e-96 354.4 240 72.9
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 9.3e-96 354.0 236 75.4
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.6e-95 353.2 239 74.9
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.1e-95 352.8 226 78.8
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.7e-95 352.4 239 72.0
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 3.5e-95 352.1 240 72.5
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 3.5e-95 352.1 239 71.1
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 4.6e-95 351.7 239 74.9
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 6.0e-95 351.3 228 75.9
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 6.0e-95 351.3 228 75.9
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 6.0e-95 351.3 238 74.4
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 7.8e-95 350.9 240 70.8
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 1.0e-94 350.5 233 73.4
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.3e-94 350.1 239 74.5
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 1.7e-94 349.7 232 74.6
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.3e-94 349.4 228 72.8
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 6.6e-94 347.8 226 76.1
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 8.7e-94 347.4 228 75.9
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-93 347.1 237 75.1
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.1e-93 347.1 228 75.9
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 1.9e-93 346.3 226 75.2
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.3e-93 345.5 231 71.9
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 4.3e-93 345.1 245 70.2
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 9.6e-93 344.0 244 71.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 1.6e-92 343.2 229 74.2
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 2.8e-92 342.4 244 70.1
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 2.8e-92 342.4 240 72.1
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.8e-92 342.4 243 69.1
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 3.6e-92 342.0 226 75.7
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 3.6e-92 342.0 242 71.5
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 4.8e-92 341.7 229 75.5
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 8.1e-92 340.9 240 71.7
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 8.1e-92 340.9 226 73.9
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 8.1e-92 340.9 229 72.9
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 5.3e-91 338.2 240 71.2
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 1.5e-90 336.7 244 71.3
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 5.8e-90 334.7 226 73.9
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 7.6e-90 334.3 229 72.1
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 9.9e-90 334.0 228 71.9
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.3e-89 333.6 225 72.0
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.2e-89 332.8 222 77.0
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.9e-89 332.4 243 68.3
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 8.4e-89 330.9 230 71.7
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 2.4e-88 329.3 230 71.7
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.4e-88 329.3 215 74.0
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.3e-86 323.6 188 83.0
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 2.5e-85 319.3 239 62.8
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 2.1e-84 316.2 217 70.0
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 3.1e-83 312.4 228 68.4
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.5e-82 310.1 243 65.0
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 2.0e-82 309.7 243 63.4
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 3.8e-81 305.4 217 68.7
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 5.5e-80 301.6 242 63.6
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 7.1e-80 301.2 207 71.0
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 4.6e-79 298.5 268 59.7
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 1.0e-78 297.4 228 61.4
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 1.8e-78 296.6 187 78.6
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 6.7e-78 294.7 229 59.0
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 1.3e-76 290.4 239 64.4
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.3e-76 290.4 228 60.5
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.4e-75 286.2 234 58.5
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 3.1e-75 285.8 206 65.5
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.1e-71 273.1 228 57.9
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 4.6e-71 271.9 228 58.3
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 5.1e-70 268.5 221 58.8
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 6.7e-70 268.1 216 59.7
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 6.7e-70 268.1 216 59.7
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 3.3e-69 265.8 216 58.8
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 4.3e-69 265.4 216 59.3
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 4.3e-69 265.4 216 59.3
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 4.3e-69 265.4 216 59.3
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 3.7e-68 262.3 217 58.5
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 6.3e-68 261.5 216 57.9
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.1e-67 260.8 206 60.7
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.1e-67 260.8 215 59.1
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-66 257.3 215 57.7
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.2e-66 257.3 228 56.1
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 3.8e-65 252.3 187 64.7
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 1.8e-62 243.4 244 51.6
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.3e-62 243.0 159 74.8
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 4.3e-61 238.8 152 75.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 5.7e-61 238.4 207 58.9
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.7e-60 235.7 230 52.2
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.0e-57 227.6 182 62.6
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 7.2e-56 221.5 212 58.5
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.2e-55 220.7 208 55.3
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 7.7e-50 201.4 232 47.4
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.9e-48 196.8 203 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 2.8e-44 183.0 202 47.0
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 1.3e-41 174.1 138 63.0
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.9e-33 146.4 223 38.6
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.6e-31 140.6 87 81.6
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.5e-24 116.7 212 34.0
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 7.5e-21 105.1 84 53.6
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.4e-19 100.9 195 36.4
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 7.0e-19 98.6 195 32.3
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 1.9e-16 90.5 67 61.2
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 5.6e-16 89.0 50 86.0
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 2.6e-13 80.1 55 65.5
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 2.4e-11 73.6 43 74.4
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 6.2e-07 58.9 205 26.8


User provided reference genes

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