Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024396 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 1.1e-156 556.6 285 100.0
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.5e-44 184.1 317 42.0
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 7.2e-39 165.2 315 38.4
CSS0034175 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 6.5e-32 142.1 275 40.0
CSS0010034 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 6.1e-30 135.6 256 37.1
CSS0048670 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.0e-29 134.8 257 38.9
CSS0001395 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 1.4e-29 134.4 175 46.9
CSS0027428 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 6.7e-29 132.1 258 37.6
CSS0020901 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 3.5e-25 119.8 282 35.5
vmacro15102 Vaccinium macrocarpon HOM05D000113 ORTHO05D001798 7.7e-17 92.0 231 32.5
Lj2g0008174 Lotus japonicus HOM05D000876 ORTHO05D000285 1.7e-16 90.9 237 29.1
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 5.0e-16 89.4 192 33.9
CSS0005392 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.2e-15 86.7 126 44.4
QL08p029247 Quercus lobata HOM05D013302 ORTHO05D015047 2.1e-14 84.0 192 32.8
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 4.7e-14 82.8 294 25.5
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 1.4e-13 81.3 189 31.7
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 3.0e-13 80.1 291 25.8
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 2.0e-12 77.4 181 34.8
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 2.0e-12 77.4 280 27.9
CANSAT54G1231 Cannabis sativa HOM05D000876 ORTHO05D000285 1.7e-11 74.3 179 33.0
Medtr4g046743 Medicago truncatula HOM05D000876 ORTHO05D000285 1.7e-11 74.3 259 29.0
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 2.2e-11 73.9 304 27.0
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 2.8e-11 73.6 302 25.5
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 3.7e-11 73.2 283 26.9
Glyma.18G110601 Glycine max HOM05D000876 ORTHO05D000285 3.7e-11 73.2 178 31.5
Rhsim05G0157800 Rhododendron simsii HOM05D000876 ORTHO05D000285 4.8e-11 72.8 186 30.6
Rhsim10G0146900 Rhododendron simsii HOM05D000876 ORTHO05D000285 6.3e-11 72.4 186 30.6
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 8.3e-11 72.0 279 27.6
Rhsim06G0093500 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.1e-10 71.6 186 30.1
vmacro00850 Vaccinium macrocarpon HOM05D002121 ORTHO05D004000 1.4e-10 71.2 187 29.4
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 1.8e-10 70.9 298 24.2
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 4.1e-10 69.7 297 23.9
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 4.1e-10 69.7 298 24.2
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.3e-10 69.3 253 26.1
Glyma.02G166900 Glycine max HOM05D000876 ORTHO05D000285 5.3e-10 69.3 166 31.9
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 2.0e-09 67.4 186 31.2
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 5.9e-09 65.9 201 31.3
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 5.9e-09 65.9 286 23.4
Actinidia38818 Actinidia chinensis HOM05D000876 ORTHO05D000285 2.9e-08 63.5 184 27.7
CANSAT35G0018 Cannabis sativa HOM05D000876 ORTHO05D000285 2.9e-08 63.5 179 30.7
Rhsim06G0024000 Rhododendron simsii HOM05D000876 ORTHO05D000285 5.0e-08 62.8 186 29.0
Lj1g0019277 Lotus japonicus HOM05D000876 ORTHO05D000285 8.5e-08 62.0 287 20.9
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.5e-07 61.2 337 23.1
arahy.Tifrunner.gnm1.ann1.D3784E Arachis hypogaea HOM05D000034 ORTHO05D000037 1.9e-07 60.8 247 24.7
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 1.9e-07 60.8 197 28.9
Dinv04817 Davidia involucrata HOM05D013161 ORTHO05D011747 1.9e-07 60.8 139 34.5
FAN05G0722 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-07 60.8 183 27.9
Medtr5g054570 Medicago truncatula HOM05D000876 ORTHO05D000285 1.9e-07 60.8 290 26.2
CSS0040684 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 5.5e-07 59.3 119 39.5
Glyma.09G090801 Glycine max HOM05D000876 ORTHO05D000285 5.5e-07 59.3 152 30.3
Potri.017G062600 Populus trichocarpa HOM05D000876 ORTHO05D000285 5.5e-07 59.3 255 21.2
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 7.2e-07 58.9 317 21.5
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 7.2e-07 58.9 317 21.5
Actinidia04386 Actinidia chinensis HOM05D000876 ORTHO05D000285 9.4e-07 58.5 336 24.4
Actinidia07377 Actinidia chinensis HOM05D000876 ORTHO05D000285 9.4e-07 58.5 336 24.4
Actinidia15148 Actinidia chinensis HOM05D000876 ORTHO05D000285 9.4e-07 58.5 336 24.4
CANSAT64G0872 Cannabis sativa HOM05D000876 ORTHO05D000285 9.4e-07 58.5 241 26.6
Ciclev10027235m.g Citrus clementina HOM05D000876 ORTHO05D000285 1.2e-06 58.2 191 29.3
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-06 57.4 281 21.7
Hma1.2p1_0667F.1_g199730 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 2.1e-06 57.4 104 31.7
CANSAT35G1570 Cannabis sativa HOM05D000876 ORTHO05D000285 2.7e-06 57.0 161 31.7
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 2.7e-06 57.0 259 27.0
TAR636G2004 Trochodendron aralioides HOM05D011880 ORTHO05D015193 2.7e-06 57.0 190 25.3
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 3.6e-06 56.6 259 27.0
TAR636G1415 Trochodendron aralioides HOM05D011286 ORTHO05D000285 3.6e-06 56.6 187 28.3
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 4.7e-06 56.2 295 21.0
Oeu032678.2 Olea europaea HOM05D000876 ORTHO05D000285 4.7e-06 56.2 293 22.9
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 4.7e-06 56.2 254 25.2
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 4.7e-06 56.2 259 27.0
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 6.1e-06 55.8 355 23.1
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 6.1e-06 55.8 300 24.3
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 6.1e-06 55.8 293 19.1
Glyma.19G073700 Glycine max HOM05D000876 ORTHO05D000285 8.0e-06 55.5 176 26.1


User provided reference genes

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