Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024369 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 4.2e-68 261.2 126 100.0
CSS0010723 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 7.0e-63 243.8 126 92.9
CSS0036734 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 7.0e-63 243.8 126 92.9
CSS0017920 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 5.0e-61 237.7 126 91.3
CSS0046174 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 9.8e-49 196.8 107 88.8
Dinv41384 Davidia involucrata HOM05D000344 ORTHO05D005296 1.5e-36 156.4 125 66.4
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 2.5e-36 155.6 123 63.4
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 4.7e-35 151.4 131 65.6
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 8.4e-32 140.6 126 60.3
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 1.4e-31 139.8 99 69.7
GSVIVG01001912001 Vitis vinifera HOM05D000344 ORTHO05D005296 1.9e-31 139.4 125 60.0
Hma1.2p1_0222F.1_g093480 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 6.0e-30 134.4 125 58.4
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 5.1e-29 131.3 129 58.9
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 1.5e-28 129.8 100 68.0
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 2.5e-28 129.0 127 58.3
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 9.6e-28 127.1 115 58.3
TAR636G0133 Trochodendron aralioides HOM05D000344 ORTHO05D005296 1.1e-26 123.6 125 58.4
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 1.4e-26 123.2 129 55.8
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 5.2e-26 121.3 93 61.3
Nn2g12347 Nelumbo nucifera HOM05D000344 ORTHO05D005296 8.9e-26 120.6 125 54.4
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 1.2e-25 120.2 110 60.0
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 2.0e-25 119.4 97 62.9
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 2.0e-25 119.4 97 61.9
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 2.6e-25 119.0 93 61.3
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 3.4e-25 118.6 121 52.1
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 4.4e-25 118.2 127 54.3
Lj9A682T45 Lonicera japonica HOM05D000344 ORTHO05D014129 7.6e-25 117.5 117 57.3
CiPaw.15G176800 Carya illinoinensis HOM05D000344 ORTHO05D005296 9.9e-25 117.1 108 59.3
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 1.3e-24 116.7 125 56.0
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 2.2e-24 115.9 113 55.8
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 2.2e-24 115.9 113 55.8
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 3.8e-24 115.2 124 50.0
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 3.8e-24 115.2 93 60.2
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 4.9e-24 114.8 108 57.4
Lsat_1_v5_gn_5_91020 Lactuca sativa HOM05D000344 ORTHO05D005296 1.1e-23 113.6 115 59.1
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 5.4e-23 111.3 94 59.6
Glyma.02G203500 Glycine max HOM05D000344 ORTHO05D005296 9.3e-23 110.5 122 50.8
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 1.6e-22 109.8 125 49.6
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 1.6e-22 109.8 122 52.5
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 2.1e-22 109.4 120 49.2
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 2.7e-22 109.0 100 55.0
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 2.7e-22 109.0 111 52.3
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 2.7e-22 109.0 126 50.0
Sed0023248 Sechium edule HOM05D000344 ORTHO05D005296 3.5e-22 108.6 124 47.6
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 4.6e-22 108.2 116 50.0
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 4.6e-22 108.2 116 51.7
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 6.0e-22 107.8 124 50.0
Carub.0008s1852 Capsella rubella HOM05D000344 ORTHO05D005296 7.8e-22 107.5 118 50.8
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 1.0e-21 107.1 122 50.0
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 1.0e-21 107.1 111 51.4
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 1.0e-21 107.1 116 50.9
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.0e-21 107.1 95 60.0
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 2.3e-21 105.9 105 59.0
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 3.0e-21 105.5 100 54.0
Cpa.g.sc46.148 Carica papaya HOM05D000344 ORTHO05D005296 3.0e-21 105.5 110 51.8
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 3.0e-21 105.5 125 48.8
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 3.9e-21 105.1 108 51.9
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 6.6e-21 104.4 97 61.9
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 8.7e-21 104.0 114 50.0
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 1.1e-20 103.6 109 54.1
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 1.1e-20 103.6 123 48.8
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 1.1e-20 103.6 114 52.6
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 1.9e-20 102.8 93 55.9
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 1.9e-20 102.8 93 55.9
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 1.9e-20 102.8 95 58.9
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 3.3e-20 102.1 99 52.5
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 4.3e-20 101.7 98 53.1
Haze_19214 Corylus avellana HOM05D000344 ORTHO05D014129 5.6e-20 101.3 101 56.4
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 1.6e-19 99.8 105 53.3
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 3.6e-19 98.6 97 53.6
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 4.8e-19 98.2 112 50.9
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 4.8e-19 98.2 119 49.6
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 4.8e-19 98.2 116 50.0
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 4.8e-19 98.2 107 53.3
Hund12031 Selenicereus undatus HOM05D000344 ORTHO05D005296 4.8e-19 98.2 93 55.9
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 4.8e-19 98.2 96 56.2
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 6.2e-19 97.8 100 52.0
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 6.2e-19 97.8 97 53.6
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 6.2e-19 97.8 122 49.2
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 6.2e-19 97.8 117 47.9
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 1.1e-18 97.1 100 54.0
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.4e-18 95.9 94 54.3
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 2.4e-18 95.9 98 51.0
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 3.1e-18 95.5 109 50.5
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 4.0e-18 95.1 104 51.9
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 5.3e-18 94.7 97 52.6
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 5.3e-18 94.7 94 54.3
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 5.3e-18 94.7 94 54.3
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 5.3e-18 94.7 97 52.6
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 5.3e-18 94.7 116 47.4
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 6.9e-18 94.4 108 48.1
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 6.9e-18 94.4 104 50.0
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 6.9e-18 94.4 115 46.1
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 1.2e-17 93.6 104 50.0
Hma1.2p1_0028F.1_g017520 Hydrangea macrophylla HOM05D000344 ORTHO05D014129 1.5e-17 93.2 102 53.9
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 2.0e-17 92.8 107 48.6
BcaNung07256 Brassica carinata HOM05D000344 ORTHO05D005296 2.0e-17 92.8 107 48.6
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 2.0e-17 92.8 96 51.0
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 2.0e-17 92.8 113 50.4
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 2.6e-17 92.4 109 49.5
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 3.4e-17 92.0 105 50.5
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 3.4e-17 92.0 119 48.7
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 1.7e-16 89.7 103 45.6
HPP92_010385 Vanilla planifolia HOM05D000344 ORTHO05D005296 2.9e-16 89.0 109 45.0
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 6.4e-16 87.8 123 46.3
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 1.1e-15 87.0 123 44.7
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 1.4e-15 86.7 109 45.9
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 2.4e-15 85.9 109 45.9
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 3.2e-15 85.5 110 45.5
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 7.1e-15 84.3 114 45.6
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 7.1e-15 84.3 98 52.0
EL10Ac7g17422 Beta vulgaris HOM05D000344 ORTHO05D005296 9.3e-15 84.0 114 47.4
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 9.3e-15 84.0 109 45.9
PSO732G0388 Papaver somniferum HOM05D000344 ORTHO05D005296 1.6e-14 83.2 98 52.0
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 4.6e-14 81.6 106 49.1
SHI02821 Sapria himalayana HOM05D000344 ORTHO05D005296 6.0e-14 81.3 97 47.4
Actinidia38329 Actinidia chinensis HOM05D000344 ORTHO05D005296 2.3e-13 79.3 42 83.3
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 8.7e-13 77.4 99 42.4
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 1.1e-12 77.0 109 45.9
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 1.9e-12 76.3 108 42.6
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 1.9e-12 76.3 97 46.4
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 1.3e-11 73.6 105 41.9
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 6.2e-11 71.2 95 45.3
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 2.0e-09 66.2 72 50.0
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 3.4e-09 65.5 117 42.7
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 4.5e-09 65.1 96 42.7
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 9.9e-09 63.9 123 39.8
BcaB05g22390 Brassica carinata HOM05D000344 ORTHO05D005296 2.2e-08 62.8 70 48.6
BcaB05g22391 Brassica carinata HOM05D000344 ORTHO05D014129 2.2e-08 62.8 70 50.0
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 2.2e-08 62.8 70 50.0
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 2.2e-08 62.8 70 50.0
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 2.2e-08 62.8 70 50.0
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 3.8e-08 62.0 99 37.4
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 2.4e-07 59.3 74 41.9
SEGI_32126 Sequoiadendron giganteum HOM05D000344 ORTHO05D005296 2.4e-07 59.3 100 41.0


User provided reference genes

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