Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 0.0e+00 1110.1 561 100.0
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 0.0e+00 1099.0 561 99.3
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.4e-235 819.7 541 79.3
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.1e-227 793.5 561 76.3
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 2.3e-222 775.8 526 75.9
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 3.3e-213 745.3 531 72.7
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.8e-211 739.6 525 72.8
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 1.0e-206 723.8 526 71.1
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 3.3e-205 718.8 526 71.3
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 3.3e-205 718.8 531 71.0
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 1.4e-200 703.4 525 70.1
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 1.5e-197 693.3 526 69.8
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.1e-195 687.2 531 67.4
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.5e-194 683.3 529 68.1
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 2.6e-194 682.6 526 68.1
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 1.3e-193 680.2 526 67.9
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 3.8e-193 678.7 526 67.1
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 5.0e-193 678.3 573 63.5
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 6.5e-193 677.9 522 67.4
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.1e-192 677.2 526 66.7
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 1.9e-192 676.4 526 66.5
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 4.2e-192 675.2 526 67.1
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 1.2e-191 673.7 523 67.7
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 3.6e-191 672.2 539 66.6
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 4.6e-191 671.8 531 67.4
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 2.2e-185 652.9 527 63.9
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 5.0e-185 651.7 529 65.2
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 5.5e-184 648.3 528 64.8
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 5.5e-184 648.3 522 66.3
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 9.4e-184 647.5 528 64.4
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 1.8e-182 643.3 527 63.4
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 7.4e-181 637.9 522 63.4
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.8e-179 633.3 420 76.9
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 4.1e-179 632.1 529 62.2
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 6.9e-179 631.3 524 63.4
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 6.9e-179 631.3 542 62.4
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 1.5e-178 630.2 522 62.1
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.3e-177 627.1 524 62.6
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 2.2e-177 626.3 519 64.0
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 2.9e-177 625.9 515 66.0
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.6e-175 620.2 522 61.9
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 3.6e-175 619.0 537 62.0
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 3.9e-174 615.5 525 61.5
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.9e-174 615.5 523 63.7
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.3e-172 610.5 529 62.9
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 1.9e-168 596.7 524 61.5
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 2.7e-167 592.8 519 59.7
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 3.6e-167 592.4 560 58.2
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 3.3e-165 585.9 529 59.5
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.1e-160 570.9 503 62.6
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.5e-160 570.5 522 59.2
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.1e-159 566.6 523 61.2
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.1e-159 566.6 523 61.2
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 3.4e-157 559.3 410 69.5
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 4.5e-154 548.9 507 60.6
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.8e-150 537.0 479 62.2
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.0e-150 535.8 478 62.6
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 1.5e-149 533.9 547 55.8
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 7.5e-149 531.6 543 56.0
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-145 521.2 549 55.9
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 1.9e-144 516.9 430 63.5
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 8.9e-134 481.5 530 54.9
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 2.7e-130 469.9 526 47.3
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.1e-126 458.0 461 54.7
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 9.2e-123 444.9 354 67.8
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 6.0e-114 415.6 353 65.2
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 4.3e-112 409.5 278 74.5
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 3.6e-111 406.4 404 58.4
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 2.4e-107 393.7 331 63.4
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 7.1e-107 392.1 307 67.1
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 9.3e-107 391.7 335 65.1
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 2.1e-106 390.6 356 61.5
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.0e-105 388.3 337 65.0
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.7e-100 370.9 349 61.0
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 2.4e-99 367.1 196 89.8
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 4.6e-98 362.8 282 67.4
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.3e-95 354.8 192 85.9
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 6.2e-95 352.4 491 40.7
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 1.4e-94 351.3 336 59.5
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.2e-93 348.2 531 41.8
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 4.9e-92 342.8 288 65.3
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.8e-84 316.6 246 68.7
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.7e-82 310.5 298 61.1
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 5.0e-76 289.7 152 92.1
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 7.2e-75 285.8 522 36.8
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.1e-72 278.5 148 87.2
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 7.7e-69 265.8 169 74.6
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 2.2e-68 264.2 169 74.6
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 2.7e-66 257.3 169 72.2
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 3.7e-63 246.9 342 45.3
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 1.8e-62 244.6 171 67.3
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 3.1e-62 243.8 171 68.4
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 5.3e-62 243.0 169 68.0
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 3.4e-61 240.4 169 66.9
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 1.0e-60 238.8 169 65.7
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.2e-60 237.7 174 66.1
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 2.9e-60 237.3 176 64.2
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 3.8e-60 236.9 350 41.7
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 2.3e-57 227.6 172 64.0
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 8.2e-55 219.2 118 88.1
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 1.1e-54 218.8 170 60.6
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.5e-51 208.4 115 83.5
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 1.6e-45 188.3 170 54.7
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.2e-44 184.5 169 56.2
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 2.5e-43 181.0 127 69.3
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 5.5e-43 179.9 132 68.2
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 7.2e-43 179.5 132 68.2
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 2.1e-42 177.9 130 64.6
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 6.8e-41 172.9 130 63.8
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.7e-39 167.2 90 87.8
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 5.5e-35 153.3 697 25.3
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 4.7e-34 150.2 114 69.3
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 2.0e-32 144.8 202 45.0
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 4.9e-31 140.2 133 50.4
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 8.6e-28 129.4 199 35.2
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.1e-18 98.2 69 59.4
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 4.0e-17 94.0 43 97.7
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 1.5e-16 92.0 43 95.3
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 1.5e-16 92.0 43 95.3
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.9e-14 85.1 56 64.3
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.9e-14 85.1 58 63.8
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 2.5e-11 74.7 51 60.8
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 1.2e-10 72.4 35 91.4
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 1.5e-08 65.5 57 54.4
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 5.8e-08 63.5 41 68.3
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 1.3e-07 62.4 128 36.7
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 1.7e-07 62.0 88 42.0
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 2.2e-07 61.6 88 40.9
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 2.9e-07 61.2 88 40.9
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 6.4e-07 60.1 34 82.4
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 1.4e-06 58.9 39 74.4
PRCOL_00007011 Prasinoderma coloniale HOM05D004669 ORTHO05D000387 4.1e-06 57.4 184 25.0
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 7.1e-06 56.6 201 29.9


User provided reference genes

Program Settings