Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024366 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D009193 4.3e-49 197.6 95 100.0
Rhsim10G0085500 Rhododendron simsii HOM05D000108 ORTHO05D009193 9.7e-33 143.3 84 85.7
Duzib147G1569 Durio zibethinus HOM05D000108 ORTHO05D009193 1.7e-32 142.5 84 84.5
Actinidia11938 Actinidia chinensis HOM05D000108 ORTHO05D009193 2.2e-32 142.1 84 84.5
Cpa.g.sc129.33 Carica papaya HOM05D000108 ORTHO05D009193 2.2e-32 142.1 84 84.5
GSVIVG01003703001 Vitis vinifera HOM05D000108 ORTHO05D009193 2.8e-32 141.7 84 83.3
RcHm_v2.0_Chr2g0109641 Rosa chinensis HOM05D000108 ORTHO05D009193 3.7e-32 141.4 84 84.5
COL.COLO4_11662 Corchorus olitorius HOM05D000070 ORTHO05D009193 1.1e-31 139.8 84 82.1
Gorai.007G229100 Gossypium raimondii HOM05D000108 ORTHO05D009193 1.4e-31 139.4 84 83.3
QL06p037786 Quercus lobata HOM05D000108 ORTHO05D009193 1.4e-31 139.4 84 83.3
TAR381G0662 Trochodendron aralioides HOM05D000108 ORTHO05D009193 1.8e-31 139.0 84 82.1
Gohir.A11G210000 Gossypium hirsutum HOM05D000108 ORTHO05D009193 2.4e-31 138.7 84 83.3
Manes.13G105500 Manihot esculenta HOM05D000108 ORTHO05D009193 2.4e-31 138.7 84 82.1
FvH4_1g18770 Fragaria vesca HOM05D000108 ORTHO05D009193 3.1e-31 138.3 84 82.1
FAN19G2730 Fragaria x ananassa HOM05D000108 ORTHO05D009193 3.1e-31 138.3 84 82.1
FAN28G2709 Fragaria x ananassa HOM05D000108 ORTHO05D009193 3.1e-31 138.3 84 82.1
Prupe.6G211700 Prunus persica HOM05D000108 ORTHO05D009193 4.1e-31 137.9 84 81.0
Cfa006811 Carpinus fangiana HOM05D000108 ORTHO05D009193 7.0e-31 137.1 84 81.0
Haze_03948 Corylus avellana HOM05D000108 ORTHO05D009193 7.0e-31 137.1 84 81.0
Dinv36996 Davidia involucrata HOM05D000108 ORTHO05D009193 7.0e-31 137.1 84 81.0
Nn5g29136 Nelumbo nucifera HOM05D000108 ORTHO05D009193 7.0e-31 137.1 84 81.0
Thecc.01G081700 Theobroma cacao HOM05D000108 ORTHO05D009193 7.0e-31 137.1 84 81.0
CANSAT01G1422 Cannabis sativa HOM05D000108 ORTHO05D009193 9.1e-31 136.7 84 81.0
FAN26G1911 Fragaria x ananassa HOM05D000108 ORTHO05D009193 9.1e-31 136.7 84 81.0
MD15G1305400 Malus domestica HOM05D000108 ORTHO05D009193 1.2e-30 136.3 84 81.0
Sed0028177 Sechium edule HOM05D000108 ORTHO05D009193 1.2e-30 136.3 84 79.8
Atru.chr3.1121 Acer truncatum HOM05D000108 ORTHO05D009193 1.6e-30 136.0 84 81.0
Atru.chr3.1130 Acer truncatum HOM05D000108 ORTHO05D009193 1.6e-30 136.0 84 81.0
Gohir.D11G213200 Gossypium hirsutum HOM05D000108 ORTHO05D009193 1.6e-30 136.0 84 82.1
Cc07_g07690 Coffea canephora HOM05D000108 ORTHO05D009193 2.0e-30 135.6 84 81.0
MD16G1282300 Malus domestica HOM05D000108 ORTHO05D009193 2.0e-30 135.6 84 81.0
MD01G1046900 Malus domestica HOM05D000108 ORTHO05D009193 3.5e-30 134.8 84 79.8
ClCG01G018080 Citrullus lanatus HOM05D000108 ORTHO05D009193 4.5e-30 134.4 84 79.8
Ciclev10027176m.g Citrus clementina HOM05D000108 ORTHO05D009193 4.5e-30 134.4 84 81.0
MELO3C007683.2 Cucumis melo HOM05D000108 ORTHO05D009193 4.5e-30 134.4 84 79.8
CsaV3_6G044610 Cucumis sativus L. HOM05D000108 ORTHO05D009193 4.5e-30 134.4 84 79.8
HanXRQChr09g0263031 Helianthus annuus HOM05D000108 ORTHO05D009193 4.5e-30 134.4 84 79.8
Nn1g05956 Nelumbo nucifera HOM05D000108 ORTHO05D009193 4.5e-30 134.4 84 79.8
Dinv26989 Davidia involucrata HOM05D000108 ORTHO05D009193 5.9e-30 134.0 84 81.0
Sc16g0000820 Simmondsia chinensis HOM05D000108 ORTHO05D009193 5.9e-30 134.0 84 79.8
Migut.L00441 Erythranthe guttata HOM05D000108 ORTHO05D009193 7.7e-30 133.7 94 73.4
SalBow7G4148 Salvia bowleyana HOM05D000108 ORTHO05D009193 1.0e-29 133.3 84 81.0
Aqoxy6G00610 Aquilegia oxysepala HOM05D000108 ORTHO05D009193 1.3e-29 132.9 84 78.6
ECA232G0770 Erigeron canadensis HOM05D000108 ORTHO05D009193 1.3e-29 132.9 84 78.6
Lsat_1_v5_gn_4_158941 Lactuca sativa HOM05D000108 ORTHO05D009193 1.3e-29 132.9 84 78.6
Oeu024999.2 Olea europaea HOM05D000108 ORTHO05D009193 1.3e-29 132.9 84 81.0
Hund16608 Selenicereus undatus HOM05D000108 ORTHO05D009193 1.3e-29 132.9 84 77.4
PSO541G5758 Papaver somniferum HOM05D000108 ORTHO05D009193 1.7e-29 132.5 84 79.8
PSO675G7990 Papaver somniferum HOM05D000108 ORTHO05D009193 1.7e-29 132.5 84 79.8
TWI53G1622 Tripterygium wilfordii HOM05D000108 ORTHO05D009193 1.7e-29 132.5 84 78.6
AT3G49650 Arabidopsis thaliana HOM05D000108 ORTHO05D009193 2.2e-29 132.1 84 79.8
THA.LOC104798446 Tarenaya hassleriana HOM05D000108 ORTHO05D009193 2.2e-29 132.1 84 79.8
ATR0767G184 Amborella trichopoda HOM05D000108 ORTHO05D009193 2.9e-29 131.7 84 77.4
Hma1.2p1_0723F.1_g208800 Hydrangea macrophylla HOM05D000108 ORTHO05D009193 2.9e-29 131.7 84 79.8
Aa31LG4G18130 Aethionema arabicum HOM05D000108 ORTHO05D009193 3.8e-29 131.3 84 79.8
MSTRG.15336 Avicennia marina HOM05D000108 ORTHO05D009193 5.0e-29 131.0 84 78.6
Nitab4.5_0000396g0240 Nicotiana tabacum HOM05D000108 ORTHO05D009193 5.0e-29 131.0 84 78.6
Lj2C427T2 Lonicera japonica HOM05D000108 ORTHO05D009193 6.5e-29 130.6 84 77.4
SGA_v2.0_scaffold527G52726 Striga asiatica HOM05D000240 ORTHO05D009193 6.5e-29 130.6 84 79.8
BcaB02g09599 Brassica carinata HOM05D000108 ORTHO05D009193 8.5e-29 130.2 84 78.6
Thhalv10010126m.g Eutrema salsugineum HOM05D000108 ORTHO05D009193 8.5e-29 130.2 84 78.6
AL5G29500 Arabidopsis lyrata HOM05D000108 ORTHO05D009193 1.1e-28 129.8 84 78.6
CARHR158690 Cardamine hirsuta HOM05D000108 ORTHO05D009193 1.1e-28 129.8 84 78.6
vmacro05468 Vaccinium macrocarpon HOM05D000240 ORTHO05D009193 1.1e-28 129.8 80 81.2
HPP92_015697 Vanilla planifolia HOM05D000108 ORTHO05D009193 1.1e-28 129.8 84 79.8
BcaC01g02425 Brassica carinata HOM05D000108 ORTHO05D009193 1.9e-28 129.0 84 78.6
A06p28360 Brassica napus HOM05D000108 ORTHO05D009193 1.9e-28 129.0 84 78.6
C03p65430 Brassica napus HOM05D000108 ORTHO05D009193 1.9e-28 129.0 84 78.6
BolC3t18795H Brassica oleracea HOM05D000108 ORTHO05D009193 1.9e-28 129.0 84 78.6
BraA06t25778Z Brassica rapa HOM05D000108 ORTHO05D009193 1.9e-28 129.0 84 78.6
CiPaw.07G041200 Carya illinoinensis HOM05D000108 ORTHO05D009193 1.9e-28 129.0 84 77.4
Eucgr.H02401 Eucalyptus grandis HOM05D000108 ORTHO05D009193 1.9e-28 129.0 84 77.4
Nitab4.5_0000093g0180 Nicotiana tabacum HOM05D000108 ORTHO05D009193 1.9e-28 129.0 84 78.6
Carub.0005s1600 Capsella rubella HOM05D000108 ORTHO05D009193 2.5e-28 128.6 84 78.6
Manes.12G119900 Manihot esculenta HOM05D000108 ORTHO05D009193 2.5e-28 128.6 84 78.6
Peaxi162Scf00939g00122 Petunia axillaris HOM05D000108 ORTHO05D009193 2.5e-28 128.6 84 78.6
PGR102G2530 Punica granatum HOM05D000108 ORTHO05D009193 3.2e-28 128.3 84 78.6
HPP92_026665 Vanilla planifolia HOM05D000108 ORTHO05D009193 4.2e-28 127.9 84 78.6
Solyc02g091780.1 Solanum lycopersicum HOM05D000108 ORTHO05D009193 7.2e-28 127.1 84 76.2
DCAR_010765 Daucus carota HOM05D000108 ORTHO05D009193 9.4e-28 126.7 84 76.2
unitig_88.g27717 Utricularia gibba HOM05D000108 ORTHO05D009193 9.4e-28 126.7 84 76.2
Os03g0773600 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D009193 1.2e-27 126.3 84 76.2
Sopen02g036360 Solanum pennellii HOM05D000108 ORTHO05D009193 1.2e-27 126.3 84 76.2
Zm00001eb059040 Zea mays HOM05D000108 ORTHO05D009193 1.2e-27 126.3 94 70.2
CAN.G1061.13 Capsicum annuum HOM05D000108 ORTHO05D009193 1.6e-27 125.9 84 76.2
Actinidia36392 Actinidia chinensis HOM05D001267 ORTHO05D009193 1.4e-26 122.9 74 82.4
SEGI_22164 Sequoiadendron giganteum HOM05D000108 ORTHO05D009193 7.5e-25 117.1 84 71.4
Pp3c2_3070 Physcomitrium patens HOM05D000108 ORTHO05D009193 7.0e-23 110.5 84 67.9
Pp3c1_32120 Physcomitrium patens HOM05D000108 ORTHO05D009193 1.6e-22 109.4 84 67.9
AagrBONN_evm.TU.Sc2ySwM_369.137 Anthoceros agrestis HOM05D000108 ORTHO05D009193 4.5e-22 107.8 84 66.7
SMO228G0201 Selaginella moellendorffii HOM05D000108 ORTHO05D009193 4.5e-22 107.8 84 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1349 Anthoceros agrestis HOM05D000108 ORTHO05D009193 5.9e-22 107.5 84 66.7
Mapoly0026s0062 Marchantia polymorpha HOM05D000108 ORTHO05D009193 6.5e-21 104.0 84 64.3
CDE04G1408 Ceratophyllum demersum HOM05D000108 ORTHO05D009193 5.2e-18 94.4 57 80.7
Cre13.g602400 Chlamydomonas reinhardtii HOM05D000108 ORTHO05D009193 1.3e-16 89.7 89 55.1
MCO15G225 Micromonas commoda HOM05D000240 ORTHO05D009193 2.4e-15 85.5 82 54.9
MCO05G156 Micromonas commoda HOM05D000108 ORTHO05D009193 3.5e-14 81.6 82 51.2
PRCOL_00002151 Prasinoderma coloniale HOM05D000108 ORTHO05D009193 3.0e-10 68.6 87 42.5
Sp5g12430 Schrenkiella parvula HOM05D001267 ORTHO05D009193 8.8e-10 67.0 35 91.4
Pp3c21_9290 Physcomitrium patens HOM05D000108 ORTHO05D007360 4.1e-07 58.2 89 41.6
EL10Ac1g02353 Beta vulgaris HOM05D000240 ORTHO05D002608 5.4e-07 57.8 78 39.7
Haze_18578 Corylus avellana HOM05D000108 ORTHO05D007360 5.4e-07 57.8 84 40.5
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 5.4e-07 57.8 78 41.0
AL4G43360 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 7.0e-07 57.4 78 39.7
MSTRG.9270 Avicennia marina HOM05D000108 ORTHO05D007360 7.0e-07 57.4 84 44.0
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 7.0e-07 57.4 78 39.7
PRCOL_00000906 Prasinoderma coloniale HOM05D000108 ORTHO05D007360 7.0e-07 57.4 81 48.1
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 9.2e-07 57.0 78 39.7
SMO367G1163 Selaginella moellendorffii HOM05D000108 ORTHO05D006029 9.2e-07 57.0 84 41.7
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 9.2e-07 57.0 78 39.7
Lalb_Chr21g0316671 Lupinus albus HOM05D000240 ORTHO05D002608 1.2e-06 56.6 78 38.5
MCO07G765 Micromonas commoda HOM05D000240 ORTHO05D002608 1.2e-06 56.6 78 34.6
Carub.0003s0934 Capsella rubella HOM05D000240 ORTHO05D002608 1.6e-06 56.2 78 42.3
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 1.6e-06 56.2 78 39.7
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 1.6e-06 56.2 78 39.7
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 2.0e-06 55.8 78 42.3
QL10p022361 Quercus lobata HOM05D000108 ORTHO05D007360 2.0e-06 55.8 84 42.9
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 2.0e-06 55.8 78 41.0
unitig_21.g20920 Utricularia gibba HOM05D000240 ORTHO05D002608 2.0e-06 55.8 78 39.7
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 2.7e-06 55.5 78 42.3
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 2.7e-06 55.5 78 42.3
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 2.7e-06 55.5 78 42.3
Cfa019841 Carpinus fangiana HOM05D000108 ORTHO05D007360 2.7e-06 55.5 84 41.7
CDE06G2749 Ceratophyllum demersum HOM05D000108 ORTHO05D007360 2.7e-06 55.5 84 42.9
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 3.5e-06 55.1 78 38.5
HanXRQChr02g0045191 Helianthus annuus HOM05D000108 ORTHO05D007360 3.5e-06 55.1 84 41.7
Oeu024316.2 Olea europaea HOM05D000108 ORTHO05D007360 3.5e-06 55.1 77 44.2
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 4.5e-06 54.7 78 41.0
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 4.5e-06 54.7 78 41.0
Ca_07278_v3 Cicer arietinum L. HOM05D000108 ORTHO05D007360 4.5e-06 54.7 84 42.9
Ca_30295_v3 Cicer arietinum L. HOM05D000108 ORTHO05D007360 4.5e-06 54.7 84 42.9
Glyma.17G123400 Glycine max HOM05D000108 ORTHO05D007360 4.5e-06 54.7 84 41.7
SMO364G0904 Selaginella moellendorffii HOM05D000240 ORTHO05D002608 4.5e-06 54.7 78 41.0
arahy.Tifrunner.gnm1.ann1.8YW9LY Arachis hypogaea HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 41.7
arahy.Tifrunner.gnm1.ann1.RQV4MD Arachis hypogaea HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 41.7
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 5.9e-06 54.3 78 41.0
CSS0001845 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 40.5
CSS0035005 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 41.7
Ca_02640_v3 Cicer arietinum L. HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 41.7
Glyma.05G014900 Glycine max HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 41.7
Mapoly0034s0119 Marchantia polymorpha HOM05D000240 ORTHO05D002608 5.9e-06 54.3 78 39.7
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 5.9e-06 54.3 78 39.7
Prupe.5G214600 Prunus persica HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 42.9
Rhsim12G0145300 Rhododendron simsii HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 41.7
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 5.9e-06 54.3 78 38.5
vmacro16460 Vaccinium macrocarpon HOM05D000108 ORTHO05D007360 5.9e-06 54.3 84 41.7
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 7.8e-06 53.9 78 37.2
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 7.8e-06 53.9 78 41.0
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 7.8e-06 53.9 78 41.0
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 7.8e-06 53.9 78 41.0
Dinv36884 Davidia involucrata HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
Dinv38602 Davidia involucrata HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
Hma1.2p1_0340F.1_g130070 Hydrangea macrophylla HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
Lj9A433T94 Lonicera japonica HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
Lj1g0024061 Lotus japonicus HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
PSO063G5633 Papaver somniferum HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
PSO782G1149 Papaver somniferum HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
Phvul.003G179100 Phaseolus vulgaris HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
Phvul.009G201300 Phaseolus vulgaris HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
TWI81G0882 Tripterygium wilfordii HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
TAR371G0925 Trochodendron aralioides HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7
VMungo1215G2663 Vigna mungo HOM05D000108 ORTHO05D007360 7.8e-06 53.9 84 41.7


User provided reference genes

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