Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024361 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D024742 3.5e-32 141.0 68 100.0
COL.COLO4_31692 Corchorus olitorius HOM05D000022 ORTHO05D000306 2.7e-13 78.2 62 59.7
QL93p0073_1127 Quercus lobata HOM05D000022 ORTHO05D000071 6.8e-12 73.6 60 55.0
Haze_06698 Corylus avellana HOM05D000022 ORTHO05D000071 8.8e-12 73.2 62 54.8
QL93p0073_1115 Quercus lobata HOM05D000022 ORTHO05D000071 2.0e-11 72.0 56 57.1
GSVIVG01006680001 Vitis vinifera HOM05D000022 ORTHO05D022457 2.6e-11 71.6 59 55.9
CsaV3_6G049370 Cucumis sativus L. HOM05D000022 ORTHO05D000071 3.4e-11 71.2 60 50.0
ClCG01G022260 Citrullus lanatus HOM05D000022 ORTHO05D000306 5.7e-11 70.5 60 50.0
MELO3C007357.2 Cucumis melo HOM05D000022 ORTHO05D000071 5.7e-11 70.5 60 50.0
Manes.16G018098 Manihot esculenta HOM05D000022 ORTHO05D000071 1.3e-10 69.3 61 52.5
Ciclev10017888m.g Citrus clementina HOM05D000022 ORTHO05D000071 6.3e-10 67.0 62 50.0
Rhsim13G0161900 Rhododendron simsii HOM05D000022 ORTHO05D000306 8.3e-10 66.6 52 51.9
Sed0017566 Sechium edule HOM05D000022 ORTHO05D000071 1.8e-09 65.5 61 47.5
vmacro03734 Vaccinium macrocarpon HOM05D000022 ORTHO05D000071 2.4e-09 65.1 55 49.1
Sed0005008 Sechium edule HOM05D000022 ORTHO05D000071 4.1e-09 64.3 54 51.9
Thecc.06G209200 Theobroma cacao HOM05D000013 ORTHO05D022457 5.4e-09 63.9 61 49.2
CANSAT56G4538 Cannabis sativa HOM05D000022 ORTHO05D000071 7.0e-09 63.5 45 60.0
Potri.011G030650 Populus trichocarpa HOM05D000022 ORTHO05D000071 1.2e-08 62.8 62 51.6
Gohir.A05G167950 Gossypium hirsutum HOM05D000022 ORTHO05D000071 1.6e-08 62.4 63 47.6
QL05p077040 Quercus lobata HOM05D000022 ORTHO05D000071 1.6e-08 62.4 63 50.8
CiPaw.01G294700 Carya illinoinensis HOM05D000022 ORTHO05D000071 2.0e-08 62.0 60 53.3
QL05p076910 Quercus lobata HOM05D000022 ORTHO05D000071 2.7e-08 61.6 62 51.6
QL93p0073_1100 Quercus lobata HOM05D000013 ORTHO05D022457 4.5e-08 60.8 40 62.5
QL93p0073_1144 Quercus lobata HOM05D000022 ORTHO05D000071 4.5e-08 60.8 63 49.2
CsaV3_6G049380 Cucumis sativus L. HOM05D000022 ORTHO05D000071 5.9e-08 60.5 61 47.5
Gorai.009G176200 Gossypium raimondii HOM05D000022 ORTHO05D000071 5.9e-08 60.5 40 65.0
QL93p0073_1182 Quercus lobata HOM05D000022 ORTHO05D000071 5.9e-08 60.5 61 49.2
COL.COLO4_31693 Corchorus olitorius HOM05D000022 ORTHO05D000071 7.7e-08 60.1 36 69.4
Gohir.D05G171000 Gossypium hirsutum HOM05D000022 ORTHO05D000071 7.7e-08 60.1 40 65.0
Sed0010627 Sechium edule HOM05D000022 ORTHO05D000071 7.7e-08 60.1 61 41.0
GSVIVG01006739001 Vitis vinifera HOM05D000022 ORTHO05D000071 1.3e-07 59.3 49 57.1
Sed0022721 Sechium edule HOM05D000022 ORTHO05D000071 1.7e-07 58.9 61 47.5
QL05p076918 Quercus lobata HOM05D000022 ORTHO05D000071 3.8e-07 57.8 63 47.6
Potri.011G036466 Populus trichocarpa HOM05D000013 ORTHO05D000011 5.0e-07 57.4 46 56.5
MBI18_g26658_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 8.6e-07 56.6 61 44.3
Nitab4.5_0000762g0120 Nicotiana tabacum HOM05D000013 ORTHO05D000689 1.1e-06 56.2 36 69.4
Nn1g03679 Nelumbo nucifera HOM05D000013 ORTHO05D000071 1.5e-06 55.8 60 43.3
QL05p076928 Quercus lobata HOM05D000022 ORTHO05D000071 1.5e-06 55.8 35 68.6
QL05p077102 Quercus lobata HOM05D000022 ORTHO05D000071 1.5e-06 55.8 61 47.5
RcHm_v2.0_Chr2g0119981 Rosa chinensis HOM05D000013 ORTHO05D000011 1.5e-06 55.8 39 64.1
Dinv18925 Davidia involucrata HOM05D000022 ORTHO05D000071 1.9e-06 55.5 60 43.3
CSS0042839 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 2.5e-06 55.1 61 44.3
CAN.G1425.18 Capsicum annuum HOM05D000013 ORTHO05D009168 2.5e-06 55.1 41 63.4
CiPaw.03G166100 Carya illinoinensis HOM05D000013 ORTHO05D000011 3.3e-06 54.7 56 41.1
CiPaw.03G166300 Carya illinoinensis HOM05D000013 ORTHO05D000011 3.3e-06 54.7 56 41.1
Lalb_Chr05g0210841 Lupinus albus HOM05D000022 ORTHO05D000071 3.3e-06 54.7 60 48.3
MBI02_g21887_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D024742 3.3e-06 54.7 40 55.0
Nitab4.5_0003898g0050 Nicotiana tabacum HOM05D000013 ORTHO05D000689 3.3e-06 54.7 36 66.7
Dinv12209 Davidia involucrata HOM05D000013 ORTHO05D000011 4.2e-06 54.3 38 63.2
Eucgr.D00850 Eucalyptus grandis HOM05D000022 ORTHO05D000071 4.2e-06 54.3 36 61.1
HanXRQChr05g0130711 Helianthus annuus HOM05D000022 ORTHO05D000071 4.2e-06 54.3 42 50.0
Potri.011G036400 Populus trichocarpa HOM05D000013 ORTHO05D000011 4.2e-06 54.3 46 56.5
QL08p035701 Quercus lobata HOM05D000013 ORTHO05D000011 4.2e-06 54.3 60 45.0
TAR627G0442 Trochodendron aralioides HOM05D000022 ORTHO05D000071 4.2e-06 54.3 42 54.8
GSVIVG01027100001 Vitis vinifera HOM05D000013 ORTHO05D022457 4.2e-06 54.3 40 57.5
CANSAT54G2966 Cannabis sativa HOM05D000013 ORTHO05D000011 5.5e-06 53.9 37 59.5
CAN.G518.1 Capsicum annuum HOM05D000013 ORTHO05D000011 5.5e-06 53.9 42 59.5
HanXRQChr05g0130681 Helianthus annuus HOM05D000022 ORTHO05D000071 5.5e-06 53.9 40 60.0
MBI18_g23791_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 5.5e-06 53.9 45 55.6
Nn1g03677 Nelumbo nucifera HOM05D000022 ORTHO05D000071 5.5e-06 53.9 55 45.5
Nitab4.5_0002906g0140 Nicotiana tabacum HOM05D000022 ORTHO05D009168 5.5e-06 53.9 57 54.4
Phvul.007G049900 Phaseolus vulgaris HOM05D000022 ORTHO05D000071 5.5e-06 53.9 47 51.1
Potri.011G035800 Populus trichocarpa HOM05D000013 ORTHO05D000011 5.5e-06 53.9 56 48.2
QL05p075476 Quercus lobata HOM05D000022 ORTHO05D000071 5.5e-06 53.9 35 65.7
QL08p032438 Quercus lobata HOM05D000022 ORTHO05D000071 5.5e-06 53.9 35 65.7
QL08p032516 Quercus lobata HOM05D000022 ORTHO05D000071 5.5e-06 53.9 35 65.7
RcHm_v2.0_Chr2g0120071 Rosa chinensis HOM05D000013 ORTHO05D000011 5.5e-06 53.9 39 61.5
arahy.Tifrunner.gnm1.ann1.AE9D0W Arachis hypogaea HOM05D000022 ORTHO05D000071 7.2e-06 53.5 58 43.1
CSS0012274 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 7.2e-06 53.5 42 54.8
CANSAT56G2594 Cannabis sativa HOM05D000013 ORTHO05D000011 7.2e-06 53.5 60 45.0
CiPaw.05G242300 Carya illinoinensis HOM05D000013 ORTHO05D000011 7.2e-06 53.5 57 47.4
ClCG02G001470 Citrullus lanatus HOM05D000013 ORTHO05D000011 7.2e-06 53.5 47 53.2
ClCG03G005320 Citrullus lanatus HOM05D000013 ORTHO05D000011 7.2e-06 53.5 47 51.1
ClCG04G011060 Citrullus lanatus HOM05D026575 ORTHO05D028765 7.2e-06 53.5 39 66.7
CsaV3_7G003960 Cucumis sativus L. HOM05D000013 ORTHO05D000011 7.2e-06 53.5 47 51.1
Hma1.2p1_0653F.1_g196190 Hydrangea macrophylla HOM05D000013 ORTHO05D009168 7.2e-06 53.5 43 58.1
MBI18_g23782_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000071 7.2e-06 53.5 45 53.3
TWI38G1151 Tripterygium wilfordii HOM05D000022 ORTHO05D000071 7.2e-06 53.5 35 62.9
arahy.Tifrunner.gnm1.ann1.GCH8EX Arachis hypogaea HOM05D000013 ORTHO05D000011 9.5e-06 53.1 43 55.8
CiPaw.09G085900 Carya illinoinensis HOM05D000022 ORTHO05D000071 9.5e-06 53.1 54 40.7
MELO3C002092.2 Cucumis melo HOM05D000013 ORTHO05D009168 9.5e-06 53.1 39 66.7
CsaV3_1G006680 Cucumis sativus L. HOM05D000013 ORTHO05D009168 9.5e-06 53.1 39 66.7
MBI08_g25566_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000071 9.5e-06 53.1 36 58.3
MBI08_g28977_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D024742 9.5e-06 53.1 39 56.4
MBI16_g05559_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D009168 9.5e-06 53.1 48 58.3
Peaxi162Scf00324g00815 Petunia axillaris HOM05D000013 ORTHO05D000011 9.5e-06 53.1 44 56.8
Potri.011G035850 Populus trichocarpa HOM05D000013 ORTHO05D000011 9.5e-06 53.1 46 56.5
Sed0016677 Sechium edule HOM05D000013 ORTHO05D000011 9.5e-06 53.1 62 45.2
Solyc02g080010.2 Solanum lycopersicum HOM05D000022 ORTHO05D000071 9.5e-06 53.1 48 50.0
Sopen02g024760 Solanum pennellii HOM05D000022 ORTHO05D000071 9.5e-06 53.1 48 50.0
TAR636G0848 Trochodendron aralioides HOM05D000013 ORTHO05D000011 9.5e-06 53.1 61 44.3


User provided reference genes

Program Settings