Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 9.9e-121 436.8 221 100.0
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 4.9e-120 434.5 221 99.1
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 2.7e-70 269.2 204 66.7
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 3.2e-63 245.7 219 58.9
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.1e-60 237.3 203 60.6
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 2.4e-58 229.6 200 58.5
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 4.1e-58 228.8 212 55.2
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 4.1e-58 228.8 211 56.4
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 7.0e-58 228.0 206 57.3
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 9.1e-58 227.6 209 57.9
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.6e-57 226.9 203 56.2
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 2.7e-57 226.1 219 54.3
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.7e-57 226.1 213 55.4
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 7.7e-57 224.6 206 56.3
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 1.0e-56 224.2 200 58.0
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.7e-56 223.4 205 55.6
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 3.8e-56 222.2 212 56.6
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 5.0e-56 221.9 205 57.1
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 1.1e-55 220.7 206 56.3
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 5.5e-55 218.4 220 52.3
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 5.5e-55 218.4 197 56.9
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.2e-54 217.2 216 53.2
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 2.1e-54 216.5 191 56.5
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 2.1e-54 216.5 213 53.5
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 4.7e-54 215.3 205 56.1
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 6.1e-54 214.9 200 55.0
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 6.1e-54 214.9 200 56.5
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 2.3e-53 213.0 212 52.4
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 8.8e-53 211.1 196 53.6
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 8.8e-53 211.1 203 54.2
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 8.8e-53 211.1 204 54.4
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.5e-52 210.3 209 54.5
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.5e-52 210.3 209 53.1
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 2.0e-52 209.9 203 54.7
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 4.4e-52 208.8 209 51.7
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 4.4e-52 208.8 212 52.4
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 7.5e-52 208.0 204 52.9
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 7.5e-52 208.0 211 53.1
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 7.5e-52 208.0 203 52.7
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 9.8e-52 207.6 213 52.1
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 9.8e-52 207.6 204 53.9
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 6.3e-51 204.9 203 51.7
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.1e-50 204.1 203 51.7
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.1e-50 204.1 210 49.0
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 2.4e-50 203.0 206 51.9
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 3.1e-50 202.6 206 50.0
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 3.1e-50 202.6 220 51.4
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 3.1e-50 202.6 203 54.2
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 3.1e-50 202.6 195 52.3
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 5.4e-50 201.8 219 51.1
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 7.0e-50 201.4 200 52.0
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 9.1e-50 201.1 198 51.5
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 9.1e-50 201.1 198 51.0
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 9.1e-50 201.1 211 49.8
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 9.1e-50 201.1 203 52.7
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 9.1e-50 201.1 204 52.0
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 2.7e-49 199.5 198 51.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 3.5e-49 199.1 197 51.8
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 7.7e-49 198.0 202 49.5
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 1.3e-48 197.2 198 53.0
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.3e-48 197.2 188 53.7
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 2.2e-48 196.4 205 50.2
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 2.2e-48 196.4 205 51.7
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.2e-48 196.4 218 46.3
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 3.8e-48 195.7 213 46.5
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.0e-48 195.3 215 48.4
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 5.0e-48 195.3 213 49.3
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 5.0e-48 195.3 213 47.9
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 6.5e-48 194.9 202 47.5
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 6.5e-48 194.9 211 49.3
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 6.5e-48 194.9 218 46.3
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 4.2e-47 192.2 209 49.3
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 4.2e-47 192.2 212 50.0
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 9.5e-47 191.0 203 49.8
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 1.6e-46 190.3 195 49.2
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.1e-46 189.9 212 46.2
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.1e-46 189.9 200 48.0
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 2.1e-46 189.9 193 48.2
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 2.7e-46 189.5 205 48.3
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 4.7e-46 188.7 198 50.0
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 6.1e-46 188.3 205 47.8
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 8.0e-46 188.0 159 58.5
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 8.0e-46 188.0 203 47.8
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 1.4e-45 187.2 203 50.7
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 1.4e-45 187.2 184 51.6
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 2.3e-45 186.4 219 46.6
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 4.0e-45 185.7 197 49.7
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 5.2e-45 185.3 217 47.9
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.2e-44 184.1 200 49.5
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 1.2e-44 184.1 205 49.8
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 3.4e-44 182.6 206 48.5
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 5.7e-44 181.8 197 47.2
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.8e-44 181.0 197 48.7
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.8e-44 181.0 197 48.7
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 9.8e-44 181.0 200 48.0
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.3e-43 180.6 205 47.8
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 2.2e-43 179.9 204 48.0
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 4.9e-43 178.7 214 45.3
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 6.3e-43 178.3 214 45.3
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 8.3e-43 177.9 197 48.2
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 8.3e-43 177.9 197 48.2
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.8e-42 176.8 203 45.8
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 4.1e-42 175.6 191 49.7
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.0e-41 173.3 206 48.1
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.0e-41 173.3 215 43.7
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 2.7e-41 172.9 221 43.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 2.7e-41 172.9 188 48.9
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 4.5e-41 172.2 206 46.6
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 1.0e-40 171.0 198 45.5
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 2.3e-40 169.9 189 47.1
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.9e-40 169.5 209 46.4
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 3.8e-40 169.1 184 47.3
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 3.8e-40 169.1 200 45.5
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 6.6e-40 168.3 186 47.8
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 6.6e-40 168.3 174 47.7
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 8.6e-40 167.9 198 46.0
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 8.6e-40 167.9 198 46.0
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 8.6e-40 167.9 198 46.0
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 1.1e-39 167.5 200 45.0
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 4.3e-39 165.6 200 45.5
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 4.3e-39 165.6 195 46.2
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 5.6e-39 165.2 162 53.1
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 2.1e-38 163.3 209 45.0
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 2.1e-38 163.3 209 45.0
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 4.7e-38 162.2 221 41.6
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.0e-37 161.0 195 45.1
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 1.4e-37 160.6 198 44.4
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 2.3e-37 159.8 210 43.3
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 5.2e-37 158.7 198 44.4
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 8.9e-37 157.9 211 38.9
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.5e-36 157.1 195 44.6
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 1.5e-36 157.1 186 44.1
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 2.6e-36 156.4 162 50.0
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 7.5e-36 154.8 205 42.4
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.7e-35 152.5 149 51.0
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.4e-34 149.8 188 45.7
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.6e-33 147.1 188 39.4
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.3e-32 144.1 164 46.3
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.7e-32 143.7 200 38.0
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.9e-32 142.5 159 47.2
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 6.6e-32 141.7 204 41.2
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.6e-32 141.7 200 37.5
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.6e-32 141.7 200 37.5
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 6.6e-32 141.7 200 37.5
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 1.5e-31 140.6 209 40.2
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 2.5e-31 139.8 199 38.2
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.6e-30 137.1 206 39.8
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 1.6e-30 137.1 206 39.8
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 3.6e-30 136.0 204 38.2
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.8e-29 133.7 188 42.0
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 5.2e-29 132.1 144 49.3
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 4.4e-28 129.0 194 36.6
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 2.9e-27 126.3 109 56.9
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.9e-26 123.6 203 36.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.9e-26 123.6 203 36.0
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.2e-25 120.9 135 48.1
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.6e-25 120.6 190 36.8
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 4.3e-23 112.5 125 52.0
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 4.7e-22 109.0 162 38.9
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 6.2e-22 108.6 191 35.1
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.0e-12 77.0 83 48.2
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 1.3e-11 74.3 217 25.8
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 2.4e-10 70.1 88 42.0
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 3.5e-09 66.2 92 42.4
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 3.5e-09 66.2 79 44.3
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 6.0e-09 65.5 160 29.4
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 6.0e-09 65.5 222 25.7
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.3e-08 64.3 69 49.3
Thecc.01G313600 Theobroma cacao HOM05D004265 ORTHO05D410241 7.3e-07 58.5 163 28.8
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 2.1e-06 57.0 52 50.0
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.8e-06 56.6 69 46.4


User provided reference genes

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