Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.2e-35 151.8 77 100.0
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.2e-35 151.8 77 100.0
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.4e-21 105.9 80 67.5
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.9e-20 100.5 80 68.8
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 6.1e-17 90.5 81 58.0
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.8e-16 89.0 78 56.4
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 6.9e-13 77.0 71 56.3
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.2e-12 76.3 79 50.6
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 2.6e-12 75.1 75 52.0
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 3.4e-12 74.7 75 54.7
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 3.4e-12 74.7 75 54.7
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 3.4e-12 74.7 75 54.7
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.9e-12 73.9 69 53.6
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.2e-11 72.0 79 50.6
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 2.9e-11 71.6 83 51.8
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 5.0e-11 70.9 75 54.7
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.0e-11 70.9 84 50.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.0e-11 70.9 79 50.6
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 6.5e-11 70.5 64 57.8
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 6.5e-11 70.5 51 64.7
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.5e-11 70.5 79 51.9
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 1.1e-10 69.7 75 52.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.4e-10 69.3 64 60.9
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.9e-10 68.9 80 50.0
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 1.9e-10 68.9 58 56.9
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 3.2e-10 68.2 69 47.8
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 3.2e-10 68.2 64 54.7
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.2e-10 68.2 79 46.8
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.2e-10 67.8 64 54.7
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 4.2e-10 67.8 68 54.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 4.2e-10 67.8 78 47.4
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 5.5e-10 67.4 75 46.7
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 5.5e-10 67.4 77 49.4
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 7.2e-10 67.0 62 56.5
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.2e-10 67.0 52 63.5
Hma1.2p1_0415F.1_g147960 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 7.2e-10 67.0 81 48.1
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 7.2e-10 67.0 59 54.2
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 7.2e-10 67.0 51 62.7
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 9.4e-10 66.6 75 48.0
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 1.2e-09 66.2 91 48.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.2e-09 66.2 58 53.4
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 1.2e-09 66.2 73 45.2
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.6e-09 65.9 74 47.3
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.6e-09 65.9 50 62.0
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.6e-09 65.9 52 51.9
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.1e-09 65.5 51 58.8
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.1e-09 65.5 51 60.8
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 2.1e-09 65.5 75 52.0
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.1e-09 65.5 75 52.0
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.7e-09 65.1 74 47.3
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.7e-09 65.1 52 61.5
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.7e-09 65.1 52 61.5
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 2.7e-09 65.1 70 52.9
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.6e-09 64.7 53 58.5
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.6e-09 64.7 52 61.5
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 6.1e-09 63.9 77 46.8
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 6.1e-09 63.9 72 51.4
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 6.1e-09 63.9 52 57.7
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 7.9e-09 63.5 53 58.5
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 1.0e-08 63.2 76 47.4
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.0e-08 63.2 58 53.4
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.0e-08 63.2 49 61.2
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.0e-08 63.2 51 58.8
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.0e-08 63.2 50 60.0
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.0e-08 63.2 72 51.4
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.0e-08 63.2 56 57.1
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.4e-08 62.8 74 45.9
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.8e-08 62.4 64 51.6
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.8e-08 62.4 54 55.6
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 2.3e-08 62.0 74 43.2
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 2.3e-08 62.0 60 55.0
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 3.0e-08 61.6 70 50.0
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 3.9e-08 61.2 46 58.7
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.9e-08 61.2 74 50.0
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 3.9e-08 61.2 73 50.7
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 3.9e-08 61.2 53 56.6
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 3.9e-08 61.2 76 47.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.1e-08 60.8 58 51.7
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.1e-08 60.8 58 51.7
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.1e-08 60.8 58 51.7
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 6.7e-08 60.5 71 43.7
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 6.7e-08 60.5 56 50.0
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 6.7e-08 60.5 53 58.5
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 8.8e-08 60.1 52 57.7
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.1e-07 59.7 57 54.4
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.1e-07 59.7 70 47.1
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 1.1e-07 59.7 47 63.8
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 1.1e-07 59.7 47 61.7
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 1.5e-07 59.3 69 47.8
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 2.0e-07 58.9 51 58.8
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 2.0e-07 58.9 51 58.8
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.0e-07 58.9 54 55.6
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 3.3e-07 58.2 67 46.3
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 3.3e-07 58.2 53 56.6
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 4.4e-07 57.8 44 61.4
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 4.4e-07 57.8 49 59.2
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 4.4e-07 57.8 48 56.2
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 5.7e-07 57.4 49 53.1
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 5.7e-07 57.4 49 55.1
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 5.7e-07 57.4 70 48.6
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 7.4e-07 57.0 51 56.9
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 7.4e-07 57.0 70 48.6
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 7.4e-07 57.0 67 47.8
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 7.4e-07 57.0 67 44.8
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 9.7e-07 56.6 49 51.0
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 9.7e-07 56.6 57 49.1
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.3e-06 56.2 56 48.2
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 1.3e-06 56.2 86 41.9
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 1.3e-06 56.2 49 51.0
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.3e-06 56.2 49 53.1
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 1.7e-06 55.8 54 53.7
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 1.7e-06 55.8 42 59.5
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 2.2e-06 55.5 51 54.9
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 2.2e-06 55.5 51 54.9
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 2.2e-06 55.5 51 52.9
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 2.2e-06 55.5 48 56.2
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.8e-06 55.1 51 54.9
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.8e-06 55.1 55 52.7
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.8e-06 55.1 55 52.7
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.8e-06 55.1 55 52.7
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.8e-06 55.1 67 44.8
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 3.7e-06 54.7 52 51.9
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 3.7e-06 54.7 48 54.2
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 3.7e-06 54.7 48 54.2
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 3.7e-06 54.7 47 55.3
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.8e-06 54.3 51 54.9
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.8e-06 54.3 76 44.7
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.8e-06 54.3 48 54.2
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.8e-06 54.3 48 54.2
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 6.3e-06 53.9 60 45.0
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 6.3e-06 53.9 66 47.0
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 6.3e-06 53.9 56 50.0
ATR0797G001 Amborella trichopoda HOM05D007433 ORTHO05D003347 8.2e-06 53.5 59 45.8
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 8.2e-06 53.5 60 45.0
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 8.2e-06 53.5 60 45.0
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 8.2e-06 53.5 60 45.0
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 8.2e-06 53.5 60 45.0
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 8.2e-06 53.5 60 45.0
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 8.2e-06 53.5 68 45.6
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 8.2e-06 53.5 44 52.3


User provided reference genes

Program Settings