Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.0e-109 399.1 189 100.0
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 1.4e-43 180.3 183 51.9
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.3e-41 172.9 183 50.8
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 1.6e-39 166.8 210 46.2
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 5.3e-38 161.8 175 48.6
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.3e-32 142.5 180 41.1
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 5.3e-30 135.2 189 39.7
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 6.9e-30 134.8 179 41.3
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 2.2e-28 129.8 180 37.8
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.4e-28 127.9 180 39.4
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 8.4e-28 127.9 211 35.5
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 3.2e-27 125.9 198 37.4
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 3.2e-27 125.9 179 39.7
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 4.2e-27 125.6 230 36.5
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 5.4e-27 125.2 176 38.6
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 9.3e-27 124.4 175 40.0
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 1.6e-26 123.6 217 35.9
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 4.6e-26 122.1 211 35.1
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 1.3e-25 120.6 175 39.4
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 5.1e-25 118.6 177 39.5
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 8.7e-25 117.9 208 35.1
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.1e-24 117.5 186 37.1
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.5e-24 116.3 184 37.0
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.3e-24 115.9 180 39.4
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 4.3e-24 115.5 180 37.8
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 4.3e-24 115.5 186 37.1
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 5.6e-24 115.2 176 38.1
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 7.4e-24 114.8 173 39.3
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 9.6e-24 114.4 180 35.6
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 1.6e-23 113.6 176 39.2
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.8e-23 112.8 186 36.6
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 2.8e-23 112.8 176 38.6
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 4.8e-23 112.1 177 36.2
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 4.8e-23 112.1 188 37.8
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.1e-22 110.9 186 35.5
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 1.4e-22 110.5 178 36.5
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 5.3e-22 108.6 175 35.4
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 3.4e-21 105.9 172 36.6
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 7.6e-21 104.8 183 33.9
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 7.6e-21 104.8 179 32.4
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 1.3e-20 104.0 160 36.9
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 4.9e-20 102.1 174 36.2
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 4.9e-20 102.1 116 44.8
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 3.2e-19 99.4 174 33.3
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 3.2e-19 99.4 166 34.9
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 7.1e-19 98.2 178 34.3
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 9.3e-19 97.8 262 30.9
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.6e-18 97.1 181 35.4
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.6e-18 97.1 204 32.8
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 2.1e-18 96.7 179 34.1
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 3.5e-18 95.9 181 33.1
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 3.5e-18 95.9 130 40.0
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 4.6e-18 95.5 180 32.2
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.0e-18 95.1 181 33.1
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 1.3e-17 94.0 122 41.0
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 4.3e-16 89.0 220 27.3
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 5.6e-16 88.6 92 51.1
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 9.6e-16 87.8 124 38.7
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.8e-15 86.3 69 60.9
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 6.2e-15 85.1 69 59.4
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 1.1e-14 84.3 188 32.4
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 2.4e-14 83.2 95 47.4
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.1e-14 82.8 61 62.3
TAR636G1398 Trochodendron aralioides HOM05D003520 ORTHO05D003332 3.1e-14 82.8 140 35.0
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 4.0e-14 82.4 90 48.9
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 9.0e-14 81.3 104 40.4
Oeu048797.1 Olea europaea HOM05D003520 ORTHO05D003332 1.5e-13 80.5 139 33.1
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 2.0e-13 80.1 88 46.6
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.6e-13 79.7 84 42.9
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 2.6e-13 79.7 80 45.0
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 3.4e-13 79.3 89 44.9
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 4.5e-13 79.0 80 50.0
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 7.6e-13 78.2 176 30.7
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.3e-12 77.4 167 32.3
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 1.3e-12 77.4 84 45.2
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 2.2e-12 76.6 167 29.9
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 2.2e-12 76.6 80 43.8
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 3.8e-12 75.9 96 39.6
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 6.5e-12 75.1 178 30.9
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 6.5e-12 75.1 83 44.6
Oeu048798.1 Olea europaea HOM05D003520 ORTHO05D003332 8.4e-12 74.7 144 31.9
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 1.4e-11 73.9 71 50.7
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.9e-11 73.6 186 29.0
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.9e-11 73.6 64 56.2
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 2.5e-11 73.2 57 54.4
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 3.2e-11 72.8 91 44.0
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 9.3e-11 71.2 60 58.3
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.2e-10 70.9 77 45.5
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 1.2e-10 70.9 205 27.8
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.6e-10 70.5 88 38.6
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 2.7e-10 69.7 180 28.3
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 6.1e-10 68.6 96 36.5
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.0e-09 67.8 54 53.7
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.3e-09 67.4 92 43.5
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.3e-09 66.6 179 29.6
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 6.7e-09 65.1 79 38.0
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 8.7e-09 64.7 188 27.7
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 8.7e-09 64.7 53 54.7
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 8.7e-09 64.7 81 43.2
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 8.7e-09 64.7 75 44.0
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 2.5e-08 63.2 179 27.4
THA.LOC104809412 Tarenaya hassleriana HOM05D012020 ORTHO05D013949 2.5e-08 63.2 124 33.1
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 4.3e-08 62.4 225 23.1
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 4.3e-08 62.4 114 36.0
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 5.7e-08 62.0 109 36.7
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 5.7e-08 62.0 118 34.7
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 1.3e-07 60.8 117 35.9
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.6e-07 60.5 77 39.0
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.2e-07 60.1 77 36.4
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.2e-07 60.1 76 40.8
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 2.8e-07 59.7 74 44.6
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 3.7e-07 59.3 162 27.8
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 3.7e-07 59.3 114 32.5
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 6.3e-07 58.5 106 36.8
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 6.3e-07 58.5 75 40.0
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 8.2e-07 58.2 100 31.0
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 1.4e-06 57.4 51 51.0
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.4e-06 57.4 68 39.7
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 1.4e-06 57.4 122 33.6
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.4e-06 57.4 105 32.4
PGSC0003DMG400042312 Solanum tuberosum HOM05D004190 ORTHO05D018124 1.4e-06 57.4 114 29.8
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.8e-06 57.0 66 42.4
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.8e-06 57.0 87 35.6
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.8e-06 57.0 66 42.4
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 2.4e-06 56.6 73 32.9
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 2.4e-06 56.6 52 44.2
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 3.1e-06 56.2 47 46.8
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 3.1e-06 56.2 73 37.0
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 4.1e-06 55.8 72 33.3
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 5.3e-06 55.5 73 37.0
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.3e-06 55.5 78 41.0
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.3e-06 55.5 78 41.0
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 5.3e-06 55.5 78 41.0
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 5.3e-06 55.5 97 32.0
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 5.3e-06 55.5 114 31.6
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 5.3e-06 55.5 71 36.6
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 6.9e-06 55.1 77 35.1
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 9.0e-06 54.7 110 35.5
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 9.0e-06 54.7 47 48.9
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 9.0e-06 54.7 61 41.0


User provided reference genes

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