Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024281 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 5.4e-53 210.7 104 100.0
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 1.2e-23 113.2 70 72.9
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 2.1e-20 102.4 69 69.6
vmacro06869 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 6.1e-20 100.9 70 68.6
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 1.8e-19 99.4 66 72.7
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 3.0e-19 98.6 69 63.8
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 6.7e-19 97.4 69 66.7
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 6.7e-19 97.4 70 72.9
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 1.1e-18 96.7 66 72.7
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 1.1e-18 96.7 66 68.2
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 1.1e-18 96.7 69 66.7
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 1.5e-18 96.3 69 62.3
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 3.3e-18 95.1 67 68.7
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 4.3e-18 94.7 70 61.4
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 4.3e-18 94.7 70 61.4
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 5.7e-18 94.4 63 66.7
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 5.7e-18 94.4 69 62.3
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 7.4e-18 94.0 70 67.1
MELO3C002725.2 Cucumis melo HOM05D005592 ORTHO05D006067 7.4e-18 94.0 69 63.8
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 7.4e-18 94.0 70 60.0
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 7.4e-18 94.0 66 69.7
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 9.7e-18 93.6 69 62.3
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 9.7e-18 93.6 65 67.7
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 9.7e-18 93.6 65 67.7
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 1.3e-17 93.2 69 66.7
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 1.3e-17 93.2 70 64.3
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 1.3e-17 93.2 70 64.3
Eucgr.H00237 Eucalyptus grandis HOM05D005592 ORTHO05D006067 1.6e-17 92.8 69 62.3
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 1.6e-17 92.8 78 60.3
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 2.8e-17 92.0 64 70.3
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 8.2e-17 90.5 65 64.6
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 8.2e-17 90.5 64 67.2
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 1.1e-16 90.1 71 62.0
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 1.4e-16 89.7 70 62.9
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 1.4e-16 89.7 65 66.2
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 1.8e-16 89.4 70 61.4
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 2.4e-16 89.0 70 61.4
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 3.1e-16 88.6 63 58.7
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 3.1e-16 88.6 69 62.3
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 5.3e-16 87.8 67 65.7
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 6.9e-16 87.4 82 48.8
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 9.0e-16 87.0 71 60.6
Glyma.04G225100 Glycine max HOM05D005592 ORTHO05D006067 9.0e-16 87.0 68 63.2
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 9.0e-16 87.0 70 54.3
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 1.2e-15 86.7 64 67.2
VMungo1309G2865 Vigna mungo HOM05D005592 ORTHO05D006067 1.2e-15 86.7 68 63.2
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 2.0e-15 85.9 71 60.6
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 2.6e-15 85.5 71 59.2
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 4.5e-15 84.7 64 59.4
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 4.5e-15 84.7 63 58.7
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 5.9e-15 84.3 68 55.9
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 1.0e-14 83.6 71 56.3
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 1.0e-14 83.6 63 57.1
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 1.0e-14 83.6 71 57.7
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 1.0e-14 83.6 68 57.4
Cpa.g.sc41.42 Carica papaya HOM05D005592 ORTHO05D006067 1.3e-14 83.2 64 62.5
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 2.9e-14 82.0 65 64.6
BcaC05g27807 Brassica carinata HOM05D005592 ORTHO05D006067 3.8e-14 81.6 69 58.0
A05p24340 Brassica napus HOM05D005592 ORTHO05D006067 3.8e-14 81.6 69 58.0
C05p38090 Brassica napus HOM05D005592 ORTHO05D006067 3.8e-14 81.6 69 58.0
BolC5t32537H Brassica oleracea HOM05D005592 ORTHO05D006067 3.8e-14 81.6 69 58.0
BraA05t21327Z Brassica rapa HOM05D005592 ORTHO05D006067 3.8e-14 81.6 69 58.0
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 3.8e-14 81.6 63 61.9
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 3.8e-14 81.6 65 63.1
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 3.8e-14 81.6 65 63.1
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 6.5e-14 80.9 65 61.5
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 6.5e-14 80.9 68 55.9
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 8.5e-14 80.5 63 60.3
CARHR032830 Cardamine hirsuta HOM05D005592 ORTHO05D006067 1.1e-13 80.1 69 55.1
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 1.1e-13 80.1 65 61.5
AL8G14960 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 1.4e-13 79.7 71 54.9
AL8G14970 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 1.4e-13 79.7 69 56.5
AL1G47780 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 1.9e-13 79.3 69 58.0
BcaB03g13702 Brassica carinata HOM05D005592 ORTHO05D006067 1.9e-13 79.3 69 55.1
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 1.9e-13 79.3 71 50.7
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 2.5e-13 79.0 68 58.8
Aa31LG6G7910 Aethionema arabicum HOM05D005592 ORTHO05D006067 3.2e-13 78.6 69 56.5
AT1G33400 Arabidopsis thaliana HOM05D005592 ORTHO05D006067 7.2e-13 77.4 69 55.1
Carub.0001s3159 Capsella rubella HOM05D005592 ORTHO05D006067 1.2e-12 76.6 71 52.1
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 1.2e-12 76.6 71 56.3
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 1.2e-12 76.6 64 54.7
Prupe.1G112400 Prunus persica HOM05D005592 ORTHO05D006067 2.1e-12 75.9 62 62.9
Sp1g28850 Schrenkiella parvula HOM05D005592 ORTHO05D006067 4.6e-12 74.7 69 55.1
Thhalv10006832m.g Eutrema salsugineum HOM05D005592 ORTHO05D006067 1.0e-11 73.6 67 53.7
Actinidia27253 Actinidia chinensis HOM05D005592 ORTHO05D006067 1.8e-11 72.8 92 45.7
ATR1126G052 Amborella trichopoda HOM05D005592 ORTHO05D006067 1.8e-11 72.8 71 49.3
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 3.0e-11 72.0 53 67.9
CDE04G0667 Ceratophyllum demersum HOM05D005592 ORTHO05D006067 8.8e-11 70.5 66 54.5
THA.LOC104813079 Tarenaya hassleriana HOM05D005592 ORTHO05D006067 1.1e-10 70.1 62 59.7
Prupe.1G112300 Prunus persica HOM05D005592 ORTHO05D006067 3.3e-10 68.6 50 70.0
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 5.7e-10 67.8 58 55.2
HPP92_022562 Vanilla planifolia HOM05D005592 ORTHO05D006067 1.3e-09 66.6 72 45.8
Zm00001eb044040 Zea mays HOM05D005592 ORTHO05D006067 1.4e-08 63.2 65 50.8
Os10g0506800 Oryza sativa ssp. japonica HOM05D005592 ORTHO05D006067 1.8e-08 62.8 65 52.3
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 2.4e-08 62.4 46 67.4
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 6.9e-08 60.8 39 74.4


User provided reference genes

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