Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024280 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.4e-36 155.6 70 100.0
CSS0040821 Camellia sinensis var. sinensis HOM05D000024 ORTHO05D000006 2.8e-29 131.3 70 82.9
CSS0014046 Camellia sinensis var. sinensis HOM05D000024 ORTHO05D000006 1.4e-28 129.0 70 82.9
CSS0037685 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 3.4e-27 124.4 67 77.6
CSS0036111 Camellia sinensis var. sinensis HOM05D000024 ORTHO05D000006 2.2e-26 121.7 71 76.1
CSS0003391 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.5e-25 118.2 62 83.9
CSS0033838 Camellia sinensis var. sinensis HOM05D000024 ORTHO05D000006 4.2e-25 117.5 70 72.9
CSS0042775 Camellia sinensis var. sinensis HOM05D000024 ORTHO05D000006 3.6e-24 114.4 62 74.2
CSS0024630 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 4.4e-22 107.5 68 70.6
CSS0030287 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 4.4e-22 107.5 68 70.6
CSS0037998 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 3.7e-21 104.4 58 72.4
CSS0042649 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.6e-19 98.2 64 67.2
CSS0046951 Camellia sinensis var. sinensis HOM05D000284 ORTHO05D000805 1.1e-17 92.8 64 64.1
CSS0021766 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.6e-14 81.6 48 68.8
CSS0015694 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-13 79.0 55 56.4
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-11 72.4 46 60.9
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-11 72.4 46 60.9
Cpa.g.sc263.17 Carica papaya HOM05D000003 ORTHO05D000006 5.9e-11 70.5 59 50.8
CSS0014297 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.3e-10 69.3 37 75.7
CSS0008337 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.7e-10 68.9 47 63.8
CSS0013517 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.2e-10 68.6 47 63.8
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-09 65.9 46 63.0
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.9e-09 65.5 47 53.2
MBI09_g23869_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 1.2e-08 62.8 59 44.1
TAR536G0010 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.6e-08 62.4 66 40.9
Atru.chr3.1632 Acer truncatum HOM05D000003 ORTHO05D000006 2.1e-08 62.0 58 46.6
COL.COLO4_10353 Corchorus olitorius HOM05D000003 ORTHO05D000006 2.1e-08 62.0 65 40.0
MBI02_g01138_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000006 2.7e-08 61.6 59 44.1
MBI18_g26031_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 6.1e-08 60.5 59 45.8
SGA_v2.0_scaffold255G45341 Striga asiatica HOM05D000003 ORTHO05D000006 6.1e-08 60.5 58 43.1
AUR62033092 Chenopodium quinoa HOM05D000003 ORTHO05D000006 8.0e-08 60.1 65 40.0
MBI19_g35570_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 8.0e-08 60.1 59 42.4
MBI03_g26338_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 1.0e-07 59.7 59 44.1
PSO170G6756 Papaver somniferum HOM05D000003 ORTHO05D000006 1.0e-07 59.7 61 45.9
Hma1.2p1_0120F.1_g057190 Hydrangea macrophylla HOM05D000003 ORTHO05D000004 1.4e-07 59.3 57 47.4
MBI05_g26192_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 1.8e-07 58.9 59 44.1
MBI19_g00144_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.8e-07 58.9 59 45.8
PSO210G3844 Papaver somniferum HOM05D000024 ORTHO05D000006 1.8e-07 58.9 61 45.9
TAR346G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.8e-07 58.9 59 44.1
MBI17_g22831_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.3e-07 58.5 58 43.1
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-07 58.2 58 44.8
Atru.chr8.1059 Acer truncatum HOM05D000024 ORTHO05D000006 3.0e-07 58.2 59 40.7
AUR62020982 Chenopodium quinoa HOM05D000003 ORTHO05D000006 3.0e-07 58.2 62 40.3
QL11p029467 Quercus lobata HOM05D000003 ORTHO05D000006 3.0e-07 58.2 65 40.0
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.0e-07 58.2 60 45.0
Atru.chr10.857 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-07 57.8 59 40.7
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 5.2e-07 57.4 59 39.0
MBI14_g02789_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 5.2e-07 57.4 59 45.8
PGR102G1324 Punica granatum HOM05D000003 ORTHO05D000006 5.2e-07 57.4 57 43.9
RhsimUnG0155100 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.2e-07 57.4 63 41.3
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 5.2e-07 57.4 69 37.7
Thecc.03G216200 Theobroma cacao HOM05D000003 ORTHO05D000006 5.2e-07 57.4 61 42.6
Atru.chr2.1761 Acer truncatum HOM05D000003 ORTHO05D000004 6.7e-07 57.0 69 33.3
Aqoxy7G02362 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.7e-07 57.0 59 39.0
COL.COLO4_27142 Corchorus olitorius HOM05D000003 ORTHO05D000006 6.7e-07 57.0 59 44.1
MBI13_g01617_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 6.7e-07 57.0 59 39.0
Atru.chr2.669 Acer truncatum HOM05D000003 ORTHO05D000004 8.8e-07 56.6 62 38.7
CANSAT56G1417 Cannabis sativa HOM05D000003 ORTHO05D000004 8.8e-07 56.6 64 40.6
MBI03_g03959_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 8.8e-07 56.6 59 44.1
MBI05_g22874_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 8.8e-07 56.6 59 42.4
MBI16_g20165_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 8.8e-07 56.6 59 44.1
MBI18_g39156_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 8.8e-07 56.6 63 39.7
Medtr1g054775 Medicago truncatula HOM05D000003 ORTHO05D000004 8.8e-07 56.6 38 57.9
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 1.2e-06 56.2 59 39.0
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 56.2 59 39.0
COL.COLO4_03979 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.2e-06 56.2 60 43.3
COL.COLO4_10338 Corchorus olitorius HOM05D000003 ORTHO05D000006 1.2e-06 56.2 59 42.4
MBI18_g23786_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 1.2e-06 56.2 57 42.1
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 1.2e-06 56.2 62 45.2
SHI46505 Sapria himalayana HOM05D000024 ORTHO05D000006 1.2e-06 56.2 63 41.3
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.2e-06 56.2 59 40.7
CSS0039123 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-06 55.8 64 43.8
MBI05_g12516_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 1.5e-06 55.8 59 40.7
MBI07_g25509_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 1.5e-06 55.8 64 37.5
MBI13_g37851_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 1.5e-06 55.8 65 40.0
vmacro12887 Vaccinium macrocarpon HOM05D000883 ORTHO05D003260 1.5e-06 55.8 59 40.7
AUR62034310 Chenopodium quinoa HOM05D000003 ORTHO05D000006 2.0e-06 55.5 62 41.9
Atru.chr6.1035 Acer truncatum HOM05D000024 ORTHO05D000006 2.6e-06 55.1 59 39.0
EL10Ac1g02112 Beta vulgaris HOM05D000003 ORTHO05D000006 2.6e-06 55.1 63 38.1
AUR62020011 Chenopodium quinoa HOM05D000003 ORTHO05D000006 2.6e-06 55.1 59 39.0
MBI14_g11425_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 2.6e-06 55.1 59 42.4
MBI16_g18658_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 2.6e-06 55.1 58 44.8
PSO210G4338 Papaver somniferum HOM05D000003 ORTHO05D000004 2.6e-06 55.1 62 38.7
QL10p010330 Quercus lobata HOM05D000003 ORTHO05D000126 2.6e-06 55.1 61 41.0
Atru.chr12.2010 Acer truncatum HOM05D000003 ORTHO05D000006 3.3e-06 54.7 58 39.7
Atru.chr13.1165 Acer truncatum HOM05D000003 ORTHO05D000006 3.3e-06 54.7 58 41.4
PSO729G0252 Papaver somniferum HOM05D000003 ORTHO05D000006 3.3e-06 54.7 58 39.7
SHI39633 Sapria himalayana HOM05D000024 ORTHO05D000006 3.3e-06 54.7 63 39.7
SHI49861 Sapria himalayana HOM05D000024 ORTHO05D000006 3.3e-06 54.7 63 39.7
Atru.chr2.1277 Acer truncatum HOM05D000003 ORTHO05D000006 4.4e-06 54.3 59 39.0
Atru.chr7.397 Acer truncatum HOM05D000003 ORTHO05D000006 4.4e-06 54.3 58 43.1
Actinidia10466 Actinidia chinensis HOM05D000003 ORTHO05D000006 4.4e-06 54.3 59 42.4
CANSAT11G0918 Cannabis sativa HOM05D000003 ORTHO05D000006 4.4e-06 54.3 59 40.7
AUR62026305 Chenopodium quinoa HOM05D000003 ORTHO05D000006 4.4e-06 54.3 54 44.4
MBI16_g04482_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 4.4e-06 54.3 59 39.0
MBI17_g25801_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 4.4e-06 54.3 59 39.0
MBI18_g24928_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.4e-06 54.3 64 39.1
MBI18_g34968_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.4e-06 54.3 59 42.4
PSO339G1594 Papaver somniferum HOM05D000003 ORTHO05D000006 4.4e-06 54.3 61 42.6
PGR142G1125 Punica granatum HOM05D000003 ORTHO05D000006 4.4e-06 54.3 58 41.4
QL04p091229 Quercus lobata HOM05D000003 ORTHO05D000006 4.4e-06 54.3 61 42.6
QL08p034129 Quercus lobata HOM05D000003 ORTHO05D000006 4.4e-06 54.3 61 39.3
SHI37898 Sapria himalayana HOM05D000024 ORTHO05D000007 4.4e-06 54.3 65 40.0
SHI37956 Sapria himalayana HOM05D000024 ORTHO05D000007 4.4e-06 54.3 65 40.0
TPR.G18288 Trifolium pratense HOM05D000003 ORTHO05D000006 4.4e-06 54.3 38 55.3
TPR.G22879 Trifolium pratense HOM05D000024 ORTHO05D000006 4.4e-06 54.3 38 55.3
PSO063G6643 Papaver somniferum HOM05D000003 ORTHO05D000006 5.7e-06 53.9 59 40.7
QL01p004841 Quercus lobata HOM05D000003 ORTHO05D000006 5.7e-06 53.9 59 37.3
TAR308G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000006 5.7e-06 53.9 63 39.7
Atru.chr1.1904 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-06 53.5 59 35.6
Atru.chr12.1960 Acer truncatum HOM05D000003 ORTHO05D000006 7.5e-06 53.5 58 43.1
Atru.chr13.2319 Acer truncatum HOM05D000003 ORTHO05D000006 7.5e-06 53.5 59 39.0
Atru.chr4.30 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-06 53.5 59 35.6
Atru.chr7.1973 Acer truncatum HOM05D000003 ORTHO05D000006 7.5e-06 53.5 58 43.1
AUR62028154 Chenopodium quinoa HOM05D000003 ORTHO05D000006 7.5e-06 53.5 64 35.9
MBI05_g04118_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 7.5e-06 53.5 56 39.3
MBI15_g04621_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 7.5e-06 53.5 63 38.1
SHI03663 Sapria himalayana HOM05D000024 ORTHO05D000006 7.5e-06 53.5 62 40.3
SHI31939 Sapria himalayana HOM05D000024 ORTHO05D000006 7.5e-06 53.5 63 39.7
SHI43095 Sapria himalayana HOM05D000024 ORTHO05D000006 7.5e-06 53.5 63 39.7
SHI43213 Sapria himalayana HOM05D000024 ORTHO05D000006 7.5e-06 53.5 63 39.7
SHI45128 Sapria himalayana HOM05D000024 ORTHO05D000006 7.5e-06 53.5 62 40.3
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 7.5e-06 53.5 68 35.3
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 9.7e-06 53.1 65 35.4
AUR62022213 Chenopodium quinoa HOM05D000003 ORTHO05D000006 9.7e-06 53.1 62 40.3
MBI17_g39149_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 9.7e-06 53.1 67 34.3
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 9.7e-06 53.1 43 46.5
SHI31021 Sapria himalayana HOM05D000024 ORTHO05D000006 9.7e-06 53.1 63 39.7
TAR710G0001 Trochodendron aralioides HOM05D000024 ORTHO05D000006 9.7e-06 53.1 59 37.3


User provided reference genes

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