Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.5e-184 649.4 344 100.0
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 3.9e-124 448.7 413 68.0
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 1.8e-92 343.6 401 52.9
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.0e-91 340.1 402 53.0
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.4e-91 339.0 402 54.0
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 1.7e-90 337.0 422 50.5
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 2.2e-90 336.7 330 58.2
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 2.4e-89 333.2 330 57.3
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 5.0e-87 325.5 344 55.2
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 4.2e-86 322.4 330 54.8
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.2e-85 320.9 408 50.2
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 4.7e-85 318.9 332 56.6
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.0e-84 317.8 330 56.1
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.0e-84 317.8 328 54.3
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.0e-84 317.8 328 55.2
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.4e-84 317.4 332 57.5
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 1.4e-84 317.4 328 56.1
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 4.0e-84 315.8 329 55.3
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 4.0e-84 315.8 328 55.2
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 4.0e-84 315.8 328 55.2
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.2e-83 314.3 302 60.3
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.2e-83 314.3 328 55.8
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-83 314.3 392 49.5
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 2.0e-83 313.5 328 55.5
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 7.5e-83 311.6 340 53.2
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 7.5e-83 311.6 338 54.7
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 2.2e-82 310.1 328 53.7
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.8e-82 309.7 404 47.3
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.7e-82 309.3 344 52.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.7e-82 309.3 344 52.0
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 2.4e-81 306.6 341 53.1
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.1e-81 306.2 344 51.7
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.2e-80 304.3 391 53.2
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 1.2e-80 304.3 328 52.4
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.6e-80 303.9 390 49.7
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 2.0e-80 303.5 328 54.6
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 2.0e-80 303.5 330 54.5
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 2.0e-80 303.5 331 53.8
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.0e-80 303.5 334 53.9
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 3.5e-80 302.8 328 54.6
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 3.5e-80 302.8 330 53.0
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 5.9e-80 302.0 335 53.7
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.3e-79 300.8 333 52.9
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 1.3e-79 300.8 330 54.2
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 1.7e-79 300.4 296 58.1
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.7e-79 300.4 332 53.9
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 2.2e-79 300.1 332 56.0
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 2.2e-79 300.1 342 52.9
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 2.9e-79 299.7 328 52.7
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 2.9e-79 299.7 332 53.9
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 3.8e-79 299.3 329 53.5
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 3.8e-79 299.3 328 52.7
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 5.0e-79 298.9 328 53.7
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 6.5e-79 298.5 329 53.2
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.1e-78 297.7 350 52.9
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.5e-78 297.4 330 52.4
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 1.9e-78 297.0 339 53.1
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 1.2e-77 294.3 328 52.1
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 1.6e-77 293.9 336 52.7
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 1.6e-77 293.9 394 49.7
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 8.0e-77 291.6 357 49.6
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 8.0e-77 291.6 328 49.1
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.4e-76 290.8 328 51.5
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.8e-76 290.4 334 51.2
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 3.4e-75 286.2 339 49.9
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 4.9e-74 282.3 344 48.5
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 8.3e-74 281.6 332 50.6
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 2.4e-73 280.0 329 50.8
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 2.9e-71 273.1 327 48.3
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.9e-71 273.1 332 47.9
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 6.6e-71 271.9 344 50.3
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.1e-70 271.2 328 48.2
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 1.5e-70 270.8 328 49.1
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 1.5e-70 270.8 332 47.6
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.9e-70 270.4 332 47.3
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 3.3e-70 269.6 328 48.5
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 3.3e-70 269.6 328 48.5
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 4.3e-70 269.2 328 48.8
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 7.3e-70 268.5 443 41.1
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 1.2e-69 267.7 347 46.1
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 2.8e-69 266.5 328 47.6
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 4.7e-69 265.8 328 47.6
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 8.0e-69 265.0 329 50.2
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 1.0e-68 264.6 289 51.6
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.0e-68 263.1 328 49.4
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 4.0e-68 262.7 328 47.6
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 6.8e-68 261.9 285 54.0
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 2.6e-67 260.0 333 47.1
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 4.9e-66 255.8 340 47.4
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 4.9e-66 255.8 336 46.1
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 1.8e-65 253.8 286 51.0
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.2e-64 251.1 292 50.3
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 1.2e-64 251.1 458 38.6
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 5.9e-64 248.8 329 45.9
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 5.9e-64 248.8 329 46.5
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 5.9e-64 248.8 329 45.9
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 5.9e-64 248.8 329 46.5
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.7e-63 247.3 329 45.3
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 6.6e-63 245.4 329 45.3
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 6.6e-63 245.4 375 41.1
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 2.5e-62 243.4 343 45.8
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 1.0e-60 238.0 294 48.3
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.4e-60 237.7 312 47.1
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 4.0e-60 236.1 311 46.0
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 7.5e-59 231.9 336 44.9
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 2.9e-58 229.9 158 75.3
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 2.3e-55 220.3 158 72.2
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 5.0e-55 219.2 158 70.9
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 8.6e-55 218.4 287 45.6
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 1.9e-54 217.2 360 40.8
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.5e-51 207.6 279 46.6
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 2.9e-50 203.4 158 65.8
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 9.2e-49 198.4 286 45.8
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 2.1e-48 197.2 532 31.8
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 6.8e-44 182.2 254 44.1
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.5e-40 169.9 285 39.6
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 7.8e-40 168.7 114 72.8
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 7.8e-40 168.7 229 44.5
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 6.6e-39 165.6 220 46.8
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 1.9e-38 164.1 159 54.7
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 7.3e-38 162.2 217 48.4
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 4.4e-35 152.9 249 39.0
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 3.9e-23 113.2 116 56.0
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 4.3e-22 109.8 168 45.2
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.4e-20 104.0 115 53.0
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.4e-17 94.7 65 67.7
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 1.9e-17 94.4 65 67.7
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 5.5e-17 92.8 61 72.1
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.1e-16 90.9 59 72.9
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.1e-16 90.9 59 72.9
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-15 88.2 59 67.8
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-15 88.2 59 67.8
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-15 88.2 92 51.1
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.3e-15 88.2 59 67.8
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 3.9e-15 86.7 59 66.1
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 8.7e-15 85.5 59 64.4
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.5e-09 67.4 259 28.6
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.0e-08 62.8 264 26.5


User provided reference genes

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