Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024231 Camellia sinensis var. sinensis HOM05D007160 ORTHO05D005331 1.6e-80 303.5 271 100.0
TAR624G0339 Trochodendron aralioides HOM05D007160 ORTHO05D005331 6.2e-16 89.0 212 38.2
Dinv01518 Davidia involucrata HOM05D008876 ORTHO05D010747 1.4e-12 77.8 234 38.9
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 2.7e-11 73.6 92 51.1
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 7.8e-11 72.0 90 51.1
Hma1.2p1_0002F.1_g002230 Hydrangea macrophylla HOM05D008876 ORTHO05D010747 1.3e-10 71.2 225 41.8
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 5.1e-10 69.3 225 39.6
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 8.7e-10 68.6 103 47.6
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 8.7e-10 68.6 97 48.5
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 1.1e-09 68.2 94 53.2
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.5e-09 67.8 220 40.0
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.5e-09 67.8 220 40.0
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 1.5e-09 67.8 232 40.1
Medtr2g090660 Medicago truncatula HOM05D008876 ORTHO05D010747 4.3e-09 66.2 232 29.7
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 4.3e-09 66.2 232 40.1
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 5.6e-09 65.9 92 51.1
TAR629G2975 Trochodendron aralioides HOM05D018497 ORTHO05D021348 7.3e-09 65.5 90 44.4
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 1.3e-08 64.7 194 35.1
Actinidia16571 Actinidia chinensis HOM05D007160 ORTHO05D005331 3.6e-08 63.2 100 48.0
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 6.2e-08 62.4 98 44.9
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 6.2e-08 62.4 226 38.5
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 8.1e-08 62.0 94 44.7
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 1.1e-07 61.6 99 43.4
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 1.1e-07 61.6 234 29.1
Nitab4.5_0001375g0140 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.8e-07 60.8 94 47.9
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 1.8e-07 60.8 95 46.3
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 1.8e-07 60.8 95 46.3
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 2.4e-07 60.5 215 41.9
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.4e-07 60.5 94 46.8
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 4.0e-07 59.7 95 49.5
Phvul.002G232100 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 5.3e-07 59.3 96 47.9
QL08p040130 Quercus lobata HOM05D008876 ORTHO05D010747 6.9e-07 58.9 234 43.2
Sc06g0009300 Simmondsia chinensis HOM05D025247 ORTHO05D026483 9.0e-07 58.5 218 29.4
TAR626G0423 Trochodendron aralioides HOM05D018497 ORTHO05D021348 1.2e-06 58.2 93 43.0
Nitab4.5_0001955g0170 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.5e-06 57.8 90 40.0
Nitab4.5_0004359g0050 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.5e-06 57.8 83 41.0
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 1.5e-06 57.8 96 49.0
COL.COLO4_35512 Corchorus olitorius HOM05D008876 ORTHO05D010747 3.4e-06 56.6 221 42.5
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 4.5e-06 56.2 225 38.2
CANSAT35G1941 Cannabis sativa HOM05D007160 ORTHO05D005331 5.8e-06 55.8 242 43.0
CANSAT64G2321 Cannabis sativa HOM05D025247 ORTHO05D010747 7.6e-06 55.5 247 29.6
CiPaw.03G181200 Carya illinoinensis HOM05D008876 ORTHO05D010747 7.6e-06 55.5 240 42.5
Nitab4.5_0000516g0090 Nicotiana tabacum HOM05D007160 ORTHO05D005331 7.6e-06 55.5 94 41.5
MELO3C018867.2 Cucumis melo HOM05D023055 ORTHO05D010747 9.9e-06 55.1 219 37.4
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 9.9e-06 55.1 228 45.2


User provided reference genes

Program Settings