Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024213 Camellia sinensis var. sinensis HOM05D013255 ORTHO05D011422 5.7e-225 783.9 385 100.0
CSS0012204 Camellia sinensis var. sinensis HOM05D013255 ORTHO05D011422 1.7e-221 772.3 385 98.2
CSS0010561 Camellia sinensis var. sinensis HOM05D013255 ORTHO05D011422 2.6e-148 529.3 380 73.2
CSS0012002 Camellia sinensis var. sinensis HOM05D013255 ORTHO05D011422 5.2e-133 478.4 386 65.0
CSS0027353 Camellia sinensis var. sinensis HOM05D013255 ORTHO05D011422 7.2e-119 431.4 364 59.3
Actinidia10958 Actinidia chinensis HOM05D013255 ORTHO05D011422 7.4e-39 165.6 243 37.0
FvH4_4g30830 Fragaria vesca HOM05D010144 ORTHO05D011422 1.4e-37 161.4 372 33.6
Prupe.5G157900 Prunus persica HOM05D013255 ORTHO05D011422 2.1e-33 147.5 336 31.2
FvH4_4g30880 Fragaria vesca HOM05D010144 ORTHO05D011422 9.4e-26 122.1 332 30.7
FvH4_4g30861 Fragaria vesca HOM05D010144 ORTHO05D011422 1.4e-24 118.2 343 30.9
FAN17G0220 Fragaria x ananassa HOM05D010144 ORTHO05D011422 1.5e-23 114.8 232 33.6
FAN17G0905 Fragaria x ananassa HOM05D010144 ORTHO05D011422 2.0e-23 114.4 375 28.3
DCAR_025514 Daucus carota HOM05D013255 ORTHO05D011422 2.6e-23 114.0 361 30.2
MD15G1041200 Malus domestica HOM05D013255 ORTHO05D011422 3.3e-23 113.6 344 29.1
FvH4_4g30890 Fragaria vesca HOM05D010144 ORTHO05D011422 3.7e-22 110.2 344 29.9
FvH4_4g30870 Fragaria vesca HOM05D010144 ORTHO05D011422 2.6e-20 104.0 222 36.0
Lj5P564T10 Lonicera japonica HOM05D012292 ORTHO05D012234 4.5e-20 103.2 298 28.9
RcHm_v2.0_Chr2g0136121 Rosa chinensis HOM05D017060 ORTHO05D012234 5.9e-20 102.8 228 34.2
FAN14G1842 Fragaria x ananassa HOM05D010144 ORTHO05D011422 2.2e-19 100.9 409 28.1
FvH4_6g44333 Fragaria vesca HOM05D010144 ORTHO05D011422 4.2e-18 96.7 409 27.6
Lj5P260T19 Lonicera japonica HOM05D012292 ORTHO05D012234 9.4e-18 95.5 362 26.8
Lj5C264T5 Lonicera japonica HOM05D012292 ORTHO05D012234 2.7e-17 94.0 334 24.9
Lj5E258T0 Lonicera japonica HOM05D012292 ORTHO05D012234 1.4e-16 91.7 210 29.5
Lju3917C0T1 Lonicera japonica HOM05D012292 ORTHO05D012234 1.4e-16 91.7 334 24.6
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 1.8e-16 91.3 283 30.4
Lj5C264T6 Lonicera japonica HOM05D012292 ORTHO05D012234 6.7e-16 89.4 334 24.3
FAN05G1166 Fragaria x ananassa HOM05D010144 ORTHO05D011422 3.3e-15 87.0 293 29.0
FAN17G3053 Fragaria x ananassa HOM05D010144 ORTHO05D011422 1.6e-12 78.2 255 27.8
Rhsim11G0054100 Rhododendron simsii HOM05D015811 ORTHO05D014676 1.6e-12 78.2 240 30.0
FvH4_6g44332 Fragaria vesca HOM05D010144 ORTHO05D011422 2.0e-12 77.8 407 23.6
MD15G1401000 Malus domestica HOM05D013255 ORTHO05D011422 2.0e-12 77.8 214 28.0
Lju3917C0T2 Lonicera japonica HOM05D012292 ORTHO05D012234 1.3e-11 75.1 256 24.2
CSS0005823 Camellia sinensis var. sinensis HOM05D015193 ORTHO05D005682 2.2e-11 74.3 185 29.7
Rhsim02G0161800 Rhododendron simsii HOM05D015811 ORTHO05D014676 6.5e-11 72.8 347 24.8
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 9.4e-10 68.9 240 24.2
FvH4_3g40701 Fragaria vesca HOM05D010144 ORTHO05D011422 2.1e-09 67.8 371 25.3
Lj2g0002624 Lotus japonicus HOM05D053378 ORTHO05D046700 4.7e-09 66.6 243 23.0
Lj5A265T30 Lonicera japonica HOM05D012292 ORTHO05D012234 1.0e-08 65.5 170 28.8
Rhsim04G0245000 Rhododendron simsii HOM05D019272 ORTHO05D020252 1.4e-08 65.1 208 29.8
CSS0000622 Camellia sinensis var. sinensis HOM05D019272 ORTHO05D020252 5.2e-08 63.2 215 25.6
Dinv24221 Davidia involucrata HOM05D015193 ORTHO05D005682 6.8e-08 62.8 190 27.9
CSS0029958 Camellia sinensis var. sinensis HOM05D019272 ORTHO05D020252 1.5e-07 61.6 215 27.9
Dinv24224 Davidia involucrata HOM05D015193 ORTHO05D005682 1.5e-07 61.6 127 30.7
Prupe.5G008800 Prunus persica HOM05D013255 ORTHO05D011422 1.5e-07 61.6 113 36.3
FAN16G3529 Fragaria x ananassa HOM05D040715 ORTHO05D035629 7.5e-07 59.3 118 35.6
PGR031G1460 Punica granatum HOM05D023452 ORTHO05D019051 2.2e-06 57.8 149 28.2
Lj2P199T12 Lonicera japonica HOM05D021051 ORTHO05D012833 3.7e-06 57.0 116 30.2
TWI79G0211 Tripterygium wilfordii HOM05D022892 ORTHO05D014676 4.8e-06 56.6 119 36.1
COL.COLO4_16993 Corchorus olitorius HOM05D017991 ORTHO05D020493 6.3e-06 56.2 219 25.1


User provided reference genes

Program Settings