Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 8.4e-96 353.6 168 100.0
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 3.6e-83 311.6 167 85.6
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 9.3e-79 297.0 168 79.8
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 2.1e-78 295.8 168 78.6
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 3.5e-78 295.0 168 79.8
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 4.6e-78 294.7 167 79.6
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 4.6e-78 294.7 167 79.6
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 1.8e-77 292.7 169 80.5
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 5.1e-77 291.2 168 77.4
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 8.1e-75 283.9 170 76.5
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.4e-74 282.3 168 75.6
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.0e-72 276.9 168 73.8
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.3e-72 276.6 172 74.4
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 2.9e-72 275.4 168 72.0
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 4.9e-72 274.6 168 70.8
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 4.9e-72 274.6 170 73.5
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 6.5e-72 274.2 168 72.0
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 8.4e-72 273.9 205 65.9
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 1.1e-71 273.5 163 73.0
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 1.4e-71 273.1 168 73.2
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 1.9e-71 272.7 168 71.4
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 7.1e-71 270.8 168 69.6
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 9.3e-71 270.4 168 70.2
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.2e-70 270.0 168 70.8
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.6e-70 269.6 168 72.0
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 4.6e-70 268.1 168 67.9
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 6.0e-70 267.7 168 70.8
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.3e-69 266.5 168 66.7
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 1.8e-69 266.2 168 74.4
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 3.0e-69 265.4 168 71.4
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 3.0e-69 265.4 168 66.1
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.0e-69 265.4 168 66.1
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 3.0e-69 265.4 168 66.1
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 8.7e-69 263.8 168 68.5
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.1e-68 263.5 168 66.7
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.9e-68 262.7 170 70.0
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.5e-68 262.3 168 70.8
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 5.7e-68 261.2 179 65.9
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.8e-67 258.8 168 67.3
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.1e-66 256.9 168 69.0
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 5.3e-66 254.6 168 68.5
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 2.0e-65 252.7 237 55.7
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.7e-64 249.6 168 67.9
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 2.2e-64 249.2 168 67.3
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 2.9e-64 248.8 170 67.6
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 5.0e-64 248.1 170 63.5
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 6.5e-64 247.7 168 66.7
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 8.4e-64 247.3 168 64.3
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.4e-63 246.5 170 62.9
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.4e-63 246.5 168 63.1
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.9e-63 246.1 168 61.9
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.9e-63 246.1 168 63.7
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 2.5e-63 245.7 168 62.5
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 2.5e-63 245.7 168 61.9
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 3.2e-63 245.4 168 64.9
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.2e-63 245.0 168 61.3
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 5.5e-63 244.6 153 72.5
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 1.2e-62 243.4 168 61.3
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.2e-62 243.4 168 64.3
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 2.7e-62 242.3 205 56.6
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 3.5e-62 241.9 184 63.0
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 3.5e-62 241.9 201 56.7
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 4.6e-62 241.5 168 60.7
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 4.6e-62 241.5 168 60.7
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 4.6e-62 241.5 168 60.7
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 4.6e-62 241.5 168 60.7
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 4.6e-62 241.5 168 62.5
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 6.1e-62 241.1 168 62.5
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 6.1e-62 241.1 168 63.1
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 7.9e-62 240.7 141 77.3
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 1.8e-61 239.6 168 62.5
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.8e-61 239.6 168 60.7
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 2.3e-61 239.2 168 60.1
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 3.9e-61 238.4 170 61.8
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 3.9e-61 238.4 168 61.9
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 3.9e-61 238.4 168 62.5
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 3.9e-61 238.4 168 62.5
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 3.9e-61 238.4 168 61.3
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 3.9e-61 238.4 169 64.5
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 5.1e-61 238.0 168 61.3
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 5.1e-61 238.0 168 61.9
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 5.1e-61 238.0 168 60.1
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 6.7e-61 237.7 168 61.9
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.5e-60 236.5 168 60.7
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 3.3e-60 235.3 168 63.7
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 3.3e-60 235.3 168 61.3
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 5.7e-60 234.6 168 62.5
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 7.4e-60 234.2 168 60.7
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 9.7e-60 233.8 169 60.9
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 9.7e-60 233.8 169 60.9
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 59.5
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 3.7e-59 231.9 168 59.5
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 3.7e-59 231.9 168 59.5
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 3.1e-58 228.8 193 56.5
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.1e-58 228.8 169 63.3
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.1e-58 228.8 169 63.3
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 4.1e-58 228.4 169 59.8
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 4.1e-58 228.4 196 53.6
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 5.3e-58 228.0 173 60.1
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 6.9e-58 227.6 182 56.0
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.2e-57 226.9 172 59.9
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.5e-57 226.5 155 62.6
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.5e-57 226.5 168 61.9
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 2.0e-57 226.1 168 61.9
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 4.5e-57 224.9 189 54.0
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 5.9e-57 224.6 188 55.3
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.3e-56 223.4 168 61.3
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.7e-56 223.0 168 59.5
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 2.5e-55 219.2 165 58.2
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.6e-54 216.5 137 70.1
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.3e-53 212.6 168 52.4
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.3e-51 206.8 190 51.1
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 5.3e-50 201.4 140 65.7
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 9.1e-50 200.7 167 58.7
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 3.4e-49 198.7 151 61.6
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 4.5e-49 198.4 169 54.4
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.0e-48 197.2 190 48.9
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 2.9e-48 195.7 126 77.0
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.5e-47 192.6 125 62.4
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 4.7e-46 188.3 168 53.6
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 3.3e-44 182.2 111 70.3
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.4e-44 181.8 145 53.8
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 5.3e-42 174.9 104 70.2
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 5.0e-40 168.3 174 47.7
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 6.5e-40 167.9 169 46.7
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 8.5e-40 167.5 168 50.0
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 8.5e-40 167.5 169 45.6
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.2e-39 165.2 173 45.7
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 4.7e-38 161.8 186 44.6
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 1.7e-35 153.3 168 47.6
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.0e-33 146.4 101 66.3
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 6.5e-32 141.4 97 69.1
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 9.4e-31 137.5 162 46.9
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 2.0e-28 129.8 171 38.6
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 2.6e-28 129.4 169 37.3
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 6.3e-27 124.8 184 37.0
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 4.1e-26 122.1 142 40.8
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 7.0e-26 121.3 163 38.7
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.0e-25 119.8 107 48.6
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 6.5e-24 114.8 169 33.7
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.2e-23 111.3 171 35.7
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 2.1e-22 109.8 86 62.8
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 4.0e-21 105.5 98 46.9
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 2.7e-17 92.8 67 64.2
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.5e-17 92.4 74 56.8
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 5.0e-08 62.0 141 28.4


User provided reference genes

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