Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 1.8e-125 452.6 228 100.0
CSS0045991 Camellia sinensis var. sinensis HOM05D000429 ORTHO05D000352 1.3e-46 190.7 98 93.9
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 1.2e-31 141.0 106 73.6
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 1.3e-30 137.5 108 73.1
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 2.7e-28 129.8 110 70.0
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.0e-27 127.9 109 67.0
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 7.5e-23 111.7 108 56.5
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 2.2e-22 110.2 105 57.1
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 6.4e-22 108.6 104 60.6
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 1.1e-21 107.8 116 55.2
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 3.2e-21 106.3 111 55.9
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 4.1e-21 105.9 110 58.2
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 7.0e-21 105.1 107 57.0
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 9.2e-21 104.8 107 59.8
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 9.2e-21 104.8 108 59.3
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 2.0e-20 103.6 113 58.4
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 6.0e-20 102.1 118 54.2
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 7.8e-20 101.7 70 78.6
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 7.8e-20 101.7 120 52.5
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.3e-19 100.1 109 54.1
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 3.0e-19 99.8 72 73.6
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.9e-19 99.4 78 69.2
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 5.0e-19 99.0 88 63.6
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 5.0e-19 99.0 107 55.1
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.6e-19 98.6 122 52.5
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.6e-19 98.6 122 52.5
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 8.6e-19 98.2 72 73.6
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 8.6e-19 98.2 122 52.5
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 8.6e-19 98.2 122 52.5
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 8.6e-19 98.2 110 54.5
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 1.1e-18 97.8 87 63.2
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.1e-18 97.8 122 52.5
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 3.3e-18 96.3 109 49.5
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 3.3e-18 96.3 123 51.2
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 4.3e-18 95.9 86 61.6
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 4.3e-18 95.9 118 52.5
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 5.6e-18 95.5 113 53.1
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 9.5e-18 94.7 78 64.1
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 9.5e-18 94.7 122 51.6
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.6e-17 94.0 70 70.0
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.1e-17 93.6 75 68.0
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.1e-17 93.6 71 71.8
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 2.8e-17 93.2 78 62.8
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 3.6e-17 92.8 98 56.1
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 3.6e-17 92.8 86 59.3
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 4.7e-17 92.4 109 55.0
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 4.7e-17 92.4 108 49.1
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 4.7e-17 92.4 102 54.9
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 6.2e-17 92.0 104 54.8
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 8.1e-17 91.7 80 63.8
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 8.1e-17 91.7 86 60.5
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.1e-16 91.3 107 55.1
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.1e-16 91.3 108 55.6
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 1.8e-16 90.5 108 48.1
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 2.3e-16 90.1 70 70.0
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.3e-16 90.1 108 50.0
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 3.1e-16 89.7 74 66.2
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 6.8e-16 88.6 88 55.7
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 6.8e-16 88.6 88 55.7
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 8.9e-16 88.2 74 64.9
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 8.9e-16 88.2 110 50.0
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 8.9e-16 88.2 110 50.0
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-15 87.8 70 68.6
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-15 87.8 70 68.6
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-15 87.8 70 68.6
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-15 87.8 70 68.6
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 1.2e-15 87.8 70 68.6
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 1.2e-15 87.8 70 68.6
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 1.2e-15 87.8 100 55.0
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.2e-15 87.8 108 50.0
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.2e-15 87.8 67 74.6
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 1.5e-15 87.4 74 63.5
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.5e-15 87.4 67 70.1
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.0e-15 87.0 74 63.5
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.0e-15 87.0 103 55.3
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 3.4e-15 86.3 87 57.5
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 3.4e-15 86.3 111 48.6
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 5.8e-15 85.5 70 67.1
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 5.8e-15 85.5 108 46.3
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 7.5e-15 85.1 74 62.2
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 7.5e-15 85.1 104 57.7
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 9.8e-15 84.7 74 62.2
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 9.8e-15 84.7 74 62.2
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 1.3e-14 84.3 108 47.2
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 1.7e-14 84.0 88 56.8
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.7e-14 84.0 108 48.1
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 2.9e-14 83.2 74 62.2
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 2.9e-14 83.2 74 62.2
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 2.9e-14 83.2 74 62.2
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.9e-14 83.2 70 62.9
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 3.7e-14 82.8 71 64.8
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 4.9e-14 82.4 71 66.2
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 1.4e-13 80.9 110 47.3
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 1.9e-13 80.5 106 50.9
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 3.2e-13 79.7 113 47.8
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 5.4e-13 79.0 107 46.7
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 2.7e-12 76.6 59 67.8
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 3.5e-12 76.3 106 47.2
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 4.6e-12 75.9 109 49.5
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 6.0e-12 75.5 121 44.6
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 7.8e-12 75.1 65 60.0
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 2.3e-11 73.6 59 64.4
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 3.9e-11 72.8 81 54.3
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 3.9e-11 72.8 94 45.7
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 6.6e-11 72.0 119 45.4
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 1.5e-10 70.9 128 42.2
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 1.9e-10 70.5 65 58.5
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 2.5e-10 70.1 123 42.3
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 5.6e-10 68.9 92 50.0
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 5.6e-10 68.9 90 52.2
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 5.6e-10 68.9 114 44.7
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 7.3e-10 68.6 124 41.9
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 9.5e-10 68.2 112 45.5
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 9.5e-10 68.2 105 43.8
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 1.6e-09 67.4 92 50.0
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 1.6e-09 67.4 119 41.2
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 1.6e-09 67.4 105 43.8
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 2.1e-09 67.0 121 41.3
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 2.8e-09 66.6 115 41.7
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 2.8e-09 66.6 70 54.3
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 2.8e-09 66.6 96 45.8
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 4.7e-09 65.9 76 51.3
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 4.7e-09 65.9 110 42.7
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 8.1e-09 65.1 72 52.8
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 8.1e-09 65.1 79 50.6
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 8.1e-09 65.1 66 54.5
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 1.1e-08 64.7 74 52.7
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 1.8e-08 63.9 79 49.4
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 2.3e-08 63.5 98 42.9
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 2.3e-08 63.5 111 44.1
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 3.1e-08 63.2 82 50.0
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 4.0e-08 62.8 122 36.1
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 5.2e-08 62.4 95 44.2
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 5.2e-08 62.4 77 50.6
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 5.2e-08 62.4 95 44.2
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 1.2e-07 61.2 125 38.4
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.5e-07 60.8 77 49.4
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.5e-07 60.8 77 49.4
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 9.9e-07 58.2 82 47.6
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 9.9e-07 58.2 118 40.7
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 1.7e-06 57.4 106 40.6
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 3.7e-06 56.2 121 38.0
arahy.Tifrunner.gnm1.ann1.I8YMJK Arachis hypogaea HOM05D005113 ORTHO05D006045 8.4e-06 55.1 85 41.2


User provided reference genes

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