Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 1.8e-107 392.5 191 100.0
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 8.9e-78 293.9 201 72.6
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.1e-75 287.0 196 73.5
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.0e-73 280.4 192 73.4
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 5.6e-72 274.6 192 71.9
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.1e-71 272.7 185 74.6
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 3.6e-71 271.9 190 69.5
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 4.8e-71 271.6 197 71.1
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 1.8e-70 269.6 193 69.4
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 3.1e-70 268.9 190 70.0
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 4.0e-70 268.5 193 68.9
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 5.3e-70 268.1 195 70.3
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 5.3e-70 268.1 195 68.7
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 1.2e-69 266.9 193 69.9
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.5e-69 266.5 190 70.0
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 2.6e-69 265.8 194 69.6
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 7.6e-69 264.2 191 67.0
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.3e-68 263.5 191 69.1
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 3.8e-68 261.9 190 69.5
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 3.8e-68 261.9 191 67.0
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 4.9e-68 261.5 195 68.2
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 8.4e-68 260.8 191 69.1
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 3.2e-67 258.8 187 70.6
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 7.1e-67 257.7 194 66.0
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 9.3e-67 257.3 187 70.1
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 2.7e-66 255.8 199 65.3
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 3.5e-66 255.4 189 68.3
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 3.5e-66 255.4 193 66.8
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 4.6e-66 255.0 189 67.7
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.6e-66 255.0 191 65.4
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 6.0e-66 254.6 200 65.0
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 7.9e-66 254.2 192 67.2
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.0e-65 253.8 194 66.0
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.0e-65 253.8 189 67.2
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.3e-65 253.4 168 74.4
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.3e-65 252.7 191 66.0
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 3.0e-65 252.3 194 66.5
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 3.9e-65 251.9 192 66.7
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 5.1e-65 251.5 168 73.8
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 5.1e-65 251.5 185 68.6
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 5.1e-65 251.5 191 66.0
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 6.7e-65 251.1 197 66.5
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 6.7e-65 251.1 189 67.2
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 8.7e-65 250.8 191 66.0
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 2.8e-63 245.7 188 67.0
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 4.8e-63 245.0 200 64.5
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 4.8e-63 245.0 190 65.8
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 4.8e-63 245.0 191 63.9
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 2.4e-62 242.7 180 68.3
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.4e-62 242.7 178 70.2
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 3.1e-62 242.3 191 65.4
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.1e-62 242.3 191 65.4
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 3.1e-62 242.3 191 65.4
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 3.1e-62 242.3 192 66.7
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 4.0e-62 241.9 195 65.1
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 6.9e-62 241.1 208 62.0
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.2e-61 240.4 190 64.2
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.2e-61 240.4 194 63.4
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.2e-61 240.4 192 64.1
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.5e-61 240.0 210 62.4
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 2.0e-61 239.6 189 61.9
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 2.0e-61 239.6 191 63.9
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 3.4e-61 238.8 190 64.7
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 3.4e-61 238.8 189 65.1
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 4.5e-61 238.4 191 64.9
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 4.5e-61 238.4 184 67.4
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 5.8e-61 238.0 189 63.5
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.3e-60 236.9 192 63.0
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.7e-60 236.5 194 62.9
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.7e-60 236.5 176 70.5
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 3.8e-60 235.3 192 63.0
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 8.4e-60 234.2 193 63.2
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.1e-59 233.8 192 62.0
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.4e-59 233.4 193 63.2
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.4e-59 233.4 193 63.2
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.4e-59 233.4 202 61.4
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.9e-59 233.0 191 62.3
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 4.2e-59 231.9 195 60.0
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 5.5e-59 231.5 193 61.7
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 5.5e-59 231.5 195 62.1
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 9.3e-59 230.7 193 60.1
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 6.0e-58 228.0 191 62.3
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.5e-56 222.6 189 61.4
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 9.6e-56 220.7 185 60.5
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 3.4e-53 212.2 177 62.1
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.1e-48 197.2 186 54.8
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.1e-48 197.2 146 68.5
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 5.7e-48 194.9 179 55.3
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.3e-47 193.7 186 55.9
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.8e-46 189.9 165 61.8
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 5.9e-45 184.9 191 56.0
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 4.2e-43 178.7 149 61.1
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 5.1e-41 171.8 187 50.3
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 4.3e-40 168.7 194 47.4
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 3.4e-37 159.1 182 48.4
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 2.5e-35 152.9 89 82.0
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 3.6e-34 149.1 104 66.3
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 1.7e-31 140.2 81 81.5
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 8.2e-31 137.9 80 82.5
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.1e-27 127.5 111 57.7
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 2.1e-26 123.2 81 74.1
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.2e-23 113.2 89 65.2
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 5.9e-21 105.1 90 58.9
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.3e-12 77.4 68 63.2
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.5e-11 73.2 176 31.8
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 8.0e-10 68.2 93 39.8
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 5.2e-09 65.5 172 30.8
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 3.4e-08 62.8 179 27.4
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 5.7e-08 62.0 76 46.1
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 5.7e-08 62.0 76 46.1
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 7.5e-08 61.6 46 65.2
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.3e-07 60.8 154 25.3
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.7e-07 60.5 84 35.7
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 2.8e-07 59.7 181 28.7
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 3.7e-07 59.3 84 36.9
vmacro15630 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 3.7e-07 59.3 82 42.7
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 6.3e-07 58.5 172 30.2
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 8.3e-07 58.2 114 32.5
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 8.3e-07 58.2 176 29.5
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 8.3e-07 58.2 176 29.5
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.1e-06 57.8 96 34.4
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 1.1e-06 57.8 111 36.0
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.4e-06 57.4 93 36.6
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.8e-06 57.0 76 42.1
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.8e-06 57.0 171 28.7
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 2.4e-06 56.6 81 37.0
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 2.4e-06 56.6 167 28.7
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 3.1e-06 56.2 181 27.1
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 4.1e-06 55.8 100 33.0
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 5.4e-06 55.5 171 27.5
PRCOL_00006077 Prasinoderma coloniale HOM05D006499 ORTHO05D007874 5.4e-06 55.5 87 37.9
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 9.1e-06 54.7 97 35.1


User provided reference genes

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