Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.5e-267 925.6 458 100.0
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.0e-204 715.3 449 78.0
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 6.7e-204 714.1 446 77.6
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.1e-203 713.4 453 76.8
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.3e-203 711.4 462 76.2
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.6e-203 711.1 462 76.6
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.1e-201 705.3 440 77.0
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.2e-200 703.4 445 75.7
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.9e-198 696.0 449 76.6
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 3.5e-197 691.8 449 74.8
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.0e-196 690.3 452 73.5
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.1e-195 686.8 452 72.8
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.8e-193 679.5 458 71.6
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.2e-192 676.8 450 73.6
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.0e-192 676.0 449 74.4
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 2.6e-192 675.6 454 72.5
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 7.6e-192 674.1 452 73.7
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 6.5e-191 671.0 450 73.3
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 6.5e-191 671.0 450 72.7
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.1e-190 670.2 448 72.5
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.4e-190 669.8 450 72.2
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.5e-190 669.1 434 74.7
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 4.2e-190 668.3 439 74.0
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 9.3e-190 667.2 454 72.2
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 9.3e-190 667.2 450 72.0
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.2e-189 666.8 452 71.5
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 3.5e-189 665.2 450 71.6
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 4.6e-189 664.8 445 71.7
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 4.6e-189 664.8 453 72.4
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.3e-188 663.3 445 72.8
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 1.8e-188 662.9 450 71.6
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 5.1e-188 661.4 462 69.3
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 8.7e-188 660.6 448 72.3
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 8.7e-188 660.6 449 73.5
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.5e-187 659.8 451 71.0
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 2.5e-187 659.1 450 69.8
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.3e-186 656.8 451 70.7
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.7e-186 655.2 450 70.2
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.4e-185 653.3 445 71.2
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.8e-185 652.9 465 69.0
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.4e-185 652.5 447 72.7
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.4e-185 652.5 447 72.7
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 2.4e-185 652.5 447 69.8
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 2.4e-185 652.5 463 69.3
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 4.1e-185 651.7 465 68.8
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 5.3e-185 651.4 445 71.5
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 6.9e-185 651.0 464 68.5
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 9.0e-185 650.6 448 70.3
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.0e-184 649.4 466 70.6
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.6e-184 649.0 450 69.8
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.6e-184 647.5 447 72.5
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 7.6e-184 647.5 457 69.4
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 1.0e-183 647.1 455 70.1
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.9e-183 645.6 466 70.4
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 5.0e-183 644.8 435 72.2
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 5.0e-183 644.8 459 69.5
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 5.0e-183 644.8 440 71.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 1.4e-182 643.3 459 69.7
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.5e-182 642.5 448 69.4
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 2.5e-182 642.5 456 70.0
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 5.5e-182 641.3 437 70.9
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 9.3e-182 640.6 465 69.0
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.7e-181 639.0 434 71.0
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 3.6e-181 638.6 447 68.0
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 3.6e-181 638.6 450 70.2
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 6.1e-181 637.9 451 69.4
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.0e-180 637.1 419 72.6
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.8e-180 636.3 417 72.9
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 2.3e-180 636.0 435 69.7
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 3.0e-180 635.6 447 68.7
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 3.9e-180 635.2 454 68.7
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 3.9e-180 635.2 455 67.9
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.9e-180 635.2 465 67.5
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 3.9e-180 635.2 455 65.7
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.9e-179 632.9 448 68.5
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 2.5e-179 632.5 445 68.8
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 4.3e-179 631.7 450 68.7
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.3e-179 631.7 444 69.1
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 4.3e-179 631.7 444 69.1
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 5.7e-179 631.3 445 68.5
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 7.4e-179 630.9 445 68.8
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 9.7e-179 630.6 458 65.7
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 2.2e-178 629.4 452 67.5
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 3.7e-178 628.6 448 68.3
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.1e-177 627.1 432 70.4
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.4e-177 625.9 444 68.0
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.4e-177 625.9 444 68.0
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 3.1e-177 625.5 436 68.6
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 9.1e-177 624.0 397 75.8
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 2.0e-176 622.9 489 64.6
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.6e-176 622.5 444 68.5
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.7e-175 619.8 442 67.6
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 3.8e-175 618.6 460 66.5
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 8.5e-175 617.5 433 70.0
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 1.1e-174 617.1 461 67.0
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.4e-174 616.7 437 68.9
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 7.2e-174 614.4 445 67.4
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 3.6e-173 612.1 434 67.7
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 3.6e-173 612.1 468 64.7
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 4.6e-173 611.7 445 67.0
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 6.1e-173 611.3 433 70.9
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 1.0e-172 610.5 455 66.4
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 3.9e-172 608.6 445 66.5
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 5.1e-172 608.2 429 69.0
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 6.7e-172 607.8 449 67.9
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 1.1e-171 607.1 445 66.5
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 1.5e-171 606.7 459 64.9
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.5e-171 606.7 432 67.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.0e-171 606.3 445 66.5
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.0e-171 606.3 445 66.5
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.6e-171 605.9 429 68.8
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 7.4e-171 604.4 466 65.2
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 1.3e-170 603.6 436 67.9
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.3e-170 603.6 446 67.0
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.2e-170 602.8 435 66.9
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 6.3e-170 601.3 449 66.6
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 8.2e-170 600.9 428 67.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.4e-169 599.4 433 67.7
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.0e-168 596.3 443 67.3
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 2.6e-168 595.9 435 66.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.4e-168 595.5 412 70.4
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 4.5e-168 595.1 435 66.4
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 5.9e-168 594.7 436 66.3
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 7.7e-168 594.3 398 71.6
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.0e-167 594.0 439 65.8
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.2e-167 592.8 449 65.7
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.8e-167 592.0 403 70.0
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 3.2e-166 589.0 437 65.9
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 1.2e-165 587.0 384 72.9
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 2.1e-165 586.3 463 63.5
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 6.1e-165 584.7 455 61.5
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.9e-164 582.0 459 63.6
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.4e-161 573.5 360 74.7
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.4e-161 572.8 429 66.4
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.7e-159 566.6 448 62.9
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 4.2e-158 562.0 392 70.9
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.7e-157 558.5 427 65.1
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.8e-156 556.6 378 70.1
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.2e-156 555.1 444 64.2
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 6.7e-156 554.7 373 72.1
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-155 553.5 391 69.3
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 3.7e-154 548.9 432 62.5
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 7.2e-142 508.1 449 58.8
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 8.3e-138 494.6 389 62.2
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.8e-137 493.4 426 59.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.3e-134 482.3 443 59.6
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-132 477.2 425 57.9
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.2e-129 466.1 428 55.6
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.3e-122 444.1 447 51.2
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.5e-118 430.6 446 52.7
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 4.0e-116 422.5 295 69.8
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.1e-105 387.9 308 64.0
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 2.7e-104 383.3 436 48.4
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-100 370.9 276 65.9
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.3e-95 354.4 237 74.7
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.1e-92 344.7 434 42.9
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.1e-89 334.7 432 44.9
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 7.1e-89 332.0 233 67.8
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 2.4e-84 317.0 384 44.0
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.1e-64 250.8 267 54.3
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 7.4e-62 242.3 161 75.2
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.8e-55 221.1 152 69.1
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.0e-50 205.3 135 71.9
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.2e-47 193.0 113 79.6
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 7.7e-35 152.5 102 67.6
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.6e-30 137.5 93 74.2
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.7e-26 124.8 153 47.7
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.7e-21 108.2 73 71.2
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 1.1e-17 95.5 84 51.2
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.1e-16 91.3 77 57.1
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.6e-08 65.1 46 67.4
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.6e-08 63.9 46 65.2
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 6.2e-08 63.2 249 22.1
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.1e-07 60.8 332 25.0
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 4.0e-07 60.5 196 28.1


User provided reference genes

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