Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.6e-112 408.3 211 100.0
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.8e-111 406.0 211 99.5
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 8.3e-85 317.4 213 79.3
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 6.6e-82 307.8 204 81.4
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.5e-81 305.8 209 78.0
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-81 305.4 208 78.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-81 305.4 208 78.4
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.3e-81 305.4 205 79.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 5.6e-81 304.7 202 78.7
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 1.2e-80 303.5 209 77.0
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 3.6e-80 302.0 204 76.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 6.2e-80 301.2 212 75.0
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.1e-79 300.4 209 76.6
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.0e-79 298.5 209 77.0
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.2e-79 298.1 192 79.7
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 6.8e-79 297.7 213 74.2
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 8.9e-79 297.4 212 75.9
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.0e-78 296.2 192 79.2
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.6e-78 295.8 192 79.2
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.6e-78 295.8 195 79.5
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.7e-77 293.1 194 79.4
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.9e-77 292.4 194 77.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 3.8e-77 292.0 207 75.4
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 4.9e-77 291.6 206 74.3
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 4.9e-77 291.6 203 75.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 6.4e-77 291.2 207 74.9
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.4e-76 290.0 213 74.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.4e-76 290.0 207 72.0
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.4e-76 290.0 210 74.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.9e-76 289.7 177 82.5
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 3.2e-76 288.9 201 73.6
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 4.2e-76 288.5 212 71.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.4e-76 288.1 207 73.9
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 5.4e-76 288.1 208 75.0
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 7.1e-76 287.7 194 75.8
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.2e-75 287.0 207 73.4
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.6e-75 286.6 214 71.5
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.6e-75 286.6 184 78.3
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.1e-75 286.2 208 72.6
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.1e-75 286.2 188 79.3
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 3.5e-75 285.4 207 71.5
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.6e-75 285.0 217 70.5
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 7.8e-75 284.3 208 71.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.3e-74 283.5 207 72.5
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.3e-74 282.7 207 71.5
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.3e-74 282.7 182 79.1
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.3e-74 282.7 207 72.9
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.0e-74 282.3 193 74.1
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 3.9e-74 282.0 204 72.5
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 3.9e-74 282.0 214 73.4
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.1e-74 281.6 183 79.2
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.1e-74 281.6 207 72.5
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.1e-74 281.6 207 72.5
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.1e-74 281.6 214 73.4
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.1e-74 281.6 194 73.7
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 8.7e-74 280.8 187 75.4
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.5e-73 280.0 198 75.8
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.5e-73 280.0 207 72.9
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.9e-73 279.6 207 72.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.9e-73 279.6 199 74.9
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.9e-73 279.6 223 69.5
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.5e-73 279.3 214 72.9
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 2.5e-73 279.3 203 74.9
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 3.3e-73 278.9 210 69.5
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 4.3e-73 278.5 216 70.4
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 4.3e-73 278.5 206 71.8
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 5.6e-73 278.1 209 71.3
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 7.3e-73 277.7 209 71.8
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.3e-72 276.9 204 69.6
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.3e-72 276.9 207 72.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.1e-72 276.2 194 74.7
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 2.1e-72 276.2 208 71.2
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 2.1e-72 276.2 214 72.4
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.8e-72 275.8 199 73.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.4e-71 273.5 211 70.1
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 3.1e-71 272.3 223 69.5
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 5.3e-71 271.6 203 68.5
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.2e-70 270.4 298 55.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.0e-70 269.6 206 66.0
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 4.4e-70 268.5 209 67.0
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.2e-69 266.2 160 84.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.2e-69 266.2 208 65.9
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 4.9e-69 265.0 195 70.8
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.4e-68 263.5 204 67.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.4e-68 263.5 201 71.6
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.9e-68 263.1 198 67.7
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 4.2e-68 261.9 201 69.2
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 4.2e-68 261.9 201 69.2
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.2e-67 260.4 201 69.2
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.7e-67 259.2 206 66.5
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.7e-67 259.2 208 66.3
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.5e-67 258.8 198 69.2
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.6e-67 258.5 201 70.6
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 6.0e-67 258.1 200 69.0
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 7.9e-67 257.7 193 68.4
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 7.9e-67 257.7 195 67.2
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.0e-66 257.3 204 65.2
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.0e-66 257.3 174 74.1
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.0e-66 257.3 155 81.9
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.3e-66 256.9 197 66.5
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 3.0e-66 255.8 202 66.3
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 8.7e-66 254.2 173 70.5
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.1e-65 253.8 207 67.1
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.1e-65 253.8 178 74.7
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.9e-65 253.1 209 65.1
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.5e-65 252.7 207 66.7
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 4.3e-65 251.9 186 71.5
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 5.6e-65 251.5 197 65.5
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.6e-65 251.5 178 71.9
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.3e-65 251.1 187 67.9
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 9.6e-65 250.8 159 79.9
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.3e-64 250.4 200 66.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.8e-64 248.4 206 64.6
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.4e-63 246.9 172 70.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.4e-63 246.1 207 65.2
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.4e-63 246.1 207 63.8
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.5e-62 243.4 203 65.0
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.9e-61 239.2 195 65.6
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.4e-61 237.7 169 73.4
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 5.4e-60 235.0 172 70.3
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 5.1e-58 228.4 170 70.6
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-55 220.3 201 60.7
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 2.7e-51 206.1 122 85.2
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.3e-50 203.8 121 84.3
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 3.0e-50 202.6 184 57.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-48 196.8 127 80.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 3.7e-48 195.7 208 58.2
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 3.4e-46 189.1 120 75.8
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.3e-45 187.2 183 54.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.9e-45 186.0 196 58.2
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.1e-44 181.4 166 63.3
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.6e-43 178.7 210 55.7
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.3e-42 176.4 161 55.9
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 8.7e-42 174.5 155 57.4
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.1e-41 174.1 188 54.8
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 9.7e-41 171.0 103 80.6
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.4e-39 166.4 180 51.1
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.0e-38 163.3 96 80.2
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.9e-37 159.5 175 48.0
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 8.5e-37 157.9 101 80.2
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.5e-33 146.4 154 50.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.3e-32 144.1 106 69.8
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.7e-29 133.7 172 47.7
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 8.5e-21 104.8 106 57.5
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.2e-19 100.9 77 63.6
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.7e-19 99.8 72 63.9
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 8.0e-19 98.2 59 74.6
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.0e-18 97.8 72 62.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 3.0e-18 96.3 148 38.5
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.6e-17 93.2 202 34.7
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 7.0e-15 85.1 193 32.1
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 8.5e-13 78.2 62 71.0
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.9e-12 77.0 95 46.3
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 2.0e-09 67.0 43 69.8
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.3e-08 64.3 40 80.0
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.7e-08 63.9 40 72.5


User provided reference genes

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