Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024119 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 2.1e-34 148.3 67 100.0
Thecc.02G278000 Theobroma cacao HOM05D003668 ORTHO05D004242 3.4e-16 87.8 42 92.9
Actinidia14944 Actinidia chinensis HOM05D003668 ORTHO05D004242 5.8e-16 87.0 38 100.0
CSS0008273 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 5.8e-16 87.0 38 100.0
MBI05_g00408_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 9.9e-16 86.3 42 90.5
AT2G01270 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 83.3
BcaB07g30412 Brassica carinata HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 83.3
BcaC03g17018 Brassica carinata HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 83.3
A02p31850 Brassica napus HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 83.3
C02p49290 Brassica napus HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 83.3
BolC2t11016H Brassica oleracea HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 83.3
BraA02t08194Z Brassica rapa HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 83.3
Carub.0005s0025 Capsella rubella HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 83.3
Cpa.g.sc65.109 Carica papaya HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 90.5
Gohir.A05G309600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.3e-15 85.9 38 97.4
Gohir.D05G310500 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.3e-15 85.9 38 97.4
Gorai.009G331400 Gossypium raimondii HOM05D003668 ORTHO05D004242 1.3e-15 85.9 38 97.4
Lalb_Chr02g0145561 Lupinus albus HOM05D003668 ORTHO05D004242 1.3e-15 85.9 38 97.4
Sp2g12730 Schrenkiella parvula HOM05D003668 ORTHO05D004242 1.3e-15 85.9 42 85.7
A09p61640 Brassica napus HOM05D003668 ORTHO05D004242 1.7e-15 85.5 42 85.7
COL.COLO4_20446 Corchorus olitorius HOM05D003668 ORTHO05D004242 1.7e-15 85.5 38 94.7
Potri.010G115700 Populus trichocarpa HOM05D003668 ORTHO05D004242 1.7e-15 85.5 38 94.7
CiPaw.06G013800 Carya illinoinensis HOM05D003668 ORTHO05D004242 2.2e-15 85.1 42 88.1
Sp1g13410 Schrenkiella parvula HOM05D003668 ORTHO05D004242 2.2e-15 85.1 42 78.6
Atru.chr11.362 Acer truncatum HOM05D003668 ORTHO05D004242 2.9e-15 84.7 42 88.1
Thhalv10000862m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 2.9e-15 84.7 42 81.0
Thhalv10007339m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 2.9e-15 84.7 42 83.3
PGR102G1044 Punica granatum HOM05D003668 ORTHO05D004242 2.9e-15 84.7 38 94.7
QL01p002314 Quercus lobata HOM05D003668 ORTHO05D004242 2.9e-15 84.7 38 94.7
Rhsim09G0101100 Rhododendron simsii HOM05D003668 ORTHO05D004242 2.9e-15 84.7 38 97.4
AL5G10220 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 3.8e-15 84.3 38 89.5
arahy.Tifrunner.gnm1.ann1.P86RCB Arachis hypogaea HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 88.1
BcaB02g06567 Brassica carinata HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 81.0
BcaB02g06571 Brassica carinata HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 81.0
Ca_11103_v3 Cicer arietinum L. HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 85.7
Haze_11039 Corylus avellana HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 88.1
Glyma.20G124700 Glycine max HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 88.1
Lj5g0008039 Lotus japonicus HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 88.1
Phvul.007G035900 Phaseolus vulgaris HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 88.1
VMungo0720G2186 Vigna mungo HOM05D003668 ORTHO05D004242 3.8e-15 84.3 42 88.1
A06p11040 Brassica napus HOM05D003668 ORTHO05D004242 4.9e-15 84.0 42 81.0
C05p13170 Brassica napus HOM05D003668 ORTHO05D004242 4.9e-15 84.0 42 81.0
BolC5t30053H Brassica oleracea HOM05D003668 ORTHO05D004242 4.9e-15 84.0 42 81.0
BraA06t24284Z Brassica rapa HOM05D003668 ORTHO05D004242 4.9e-15 84.0 42 81.0
Glyma.10G265900 Glycine max HOM05D003668 ORTHO05D004242 4.9e-15 84.0 42 85.7
MBI10_g37695_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 4.9e-15 84.0 39 89.7
Sabra08G0096100 Salix brachista HOM05D003668 ORTHO05D004242 4.9e-15 84.0 38 94.7
Sc11g0004080 Simmondsia chinensis HOM05D003668 ORTHO05D004242 4.9e-15 84.0 42 88.1
AL1G27090 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 6.4e-15 83.6 42 81.0
COL.COLO4_20445 Corchorus olitorius HOM05D003668 ORTHO05D004242 6.4e-15 83.6 42 85.7
Lalb_Chr21g0308541 Lupinus albus HOM05D003668 ORTHO05D004242 6.4e-15 83.6 38 94.7
vmacro10624 Vaccinium macrocarpon HOM05D003668 ORTHO05D004242 6.4e-15 83.6 38 97.4
GSVIVG01011788001 Vitis vinifera HOM05D003668 ORTHO05D004242 6.4e-15 83.6 38 94.7
arahy.Tifrunner.gnm1.ann1.V9FAYY Arachis hypogaea HOM05D003668 ORTHO05D004242 8.4e-15 83.2 42 85.7
BcaC05g25439 Brassica carinata HOM05D003668 ORTHO05D004242 8.4e-15 83.2 42 81.0
MBI10_g41073_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 8.4e-15 83.2 37 94.6
MD13G1028500 Malus domestica HOM05D003668 ORTHO05D004242 8.4e-15 83.2 42 83.3
Medtr1g108590 Medicago truncatula HOM05D003668 ORTHO05D004242 8.4e-15 83.2 42 83.3
Dinv05883 Davidia involucrata HOM05D003668 ORTHO05D004242 1.1e-14 82.8 38 94.7
Lalb_Chr06g0165651 Lupinus albus HOM05D003668 ORTHO05D004242 1.1e-14 82.8 38 92.1
Lj3A875T61 Lonicera japonica HOM05D003668 ORTHO05D004242 1.4e-14 82.4 38 94.7
Manes.14G135800 Manihot esculenta HOM05D003668 ORTHO05D004242 1.4e-14 82.4 38 89.5
Sabra10G0085600 Salix brachista HOM05D003668 ORTHO05D004242 1.4e-14 82.4 38 92.1
Sabra10G0087300 Salix brachista HOM05D003668 ORTHO05D004242 1.4e-14 82.4 38 92.1
TPR.G4938 Trifolium pratense HOM05D003668 ORTHO05D004242 1.4e-14 82.4 42 85.7
BolC8t52070H Brassica oleracea HOM05D003668 ORTHO05D004242 1.9e-14 82.0 42 83.3
ClCG05G022250 Citrullus lanatus HOM05D003668 ORTHO05D004242 1.9e-14 82.0 38 92.1
MELO3C012298.2 Cucumis melo HOM05D003668 ORTHO05D004242 1.9e-14 82.0 38 92.1
CsaV3_5G034880 Cucumis sativus L. HOM05D003668 ORTHO05D004242 1.9e-14 82.0 38 92.1
Manes.06G062100 Manihot esculenta HOM05D003668 ORTHO05D004242 1.9e-14 82.0 38 89.5
RcHm_v2.0_Chr4g0440821 Rosa chinensis HOM05D003668 ORTHO05D004242 1.9e-14 82.0 42 85.7
TWI31G1185 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 1.9e-14 82.0 38 92.1
Aa31LG2G8640 Aethionema arabicum HOM05D003668 ORTHO05D004242 2.4e-14 81.6 42 78.6
ATR0326G075 Amborella trichopoda HOM05D003668 ORTHO05D004242 2.4e-14 81.6 42 83.3
C08p45220 Brassica napus HOM05D003668 ORTHO05D004242 2.4e-14 81.6 42 83.3
CAN.G1693.10 Capsicum annuum HOM05D003668 ORTHO05D004242 2.4e-14 81.6 37 94.6
AT1G15020 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 3.2e-14 81.3 42 78.6
CiPaw.05G247100 Carya illinoinensis HOM05D003668 ORTHO05D004242 3.2e-14 81.3 42 85.7
Duzib268G0050 Durio zibethinus HOM05D003668 ORTHO05D004242 3.2e-14 81.3 42 83.3
Eucgr.B02887 Eucalyptus grandis HOM05D003668 ORTHO05D004242 3.2e-14 81.3 38 89.5
Hma1.2p1_0114F.1_g055270 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 3.2e-14 81.3 42 83.3
Hma1.2p1_2887F.1_g329930 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 3.2e-14 81.3 42 83.3
Prupe.1G321800 Prunus persica HOM05D003668 ORTHO05D004242 3.2e-14 81.3 42 85.7
Sed0001529 Sechium edule HOM05D003668 ORTHO05D004242 3.2e-14 81.3 38 89.5
HPP92_020133 Vanilla planifolia HOM05D003668 ORTHO05D004242 3.2e-14 81.3 38 86.8
CANSAT01G1684 Cannabis sativa HOM05D003668 ORTHO05D004242 4.2e-14 80.9 42 81.0
CARHR015560 Cardamine hirsuta HOM05D003668 ORTHO05D004242 4.2e-14 80.9 42 76.2
Potri.008G127300 Populus trichocarpa HOM05D003668 ORTHO05D004242 4.2e-14 80.9 38 92.1
Carub.0001s1479 Capsella rubella HOM05D003668 ORTHO05D004242 5.5e-14 80.5 42 78.6
Glyma.20G135000 Glycine max HOM05D003668 ORTHO05D004242 5.5e-14 80.5 42 83.3
Nn4g24060 Nelumbo nucifera HOM05D003668 ORTHO05D004242 5.5e-14 80.5 42 78.6
Cc11_g09050 Coffea canephora HOM05D003668 ORTHO05D004242 9.3e-14 79.7 38 92.1
Psat6g222240 Pisum sativum HOM05D003668 ORTHO05D004242 9.3e-14 79.7 42 83.3
TWI79G0359 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 9.3e-14 79.7 38 89.5
Aqoxy3G00162 Aquilegia oxysepala HOM05D003668 ORTHO05D004242 1.2e-13 79.3 42 78.6
AUR62014140 Chenopodium quinoa HOM05D003668 ORTHO05D004242 1.2e-13 79.3 42 78.6
AUR62041242 Chenopodium quinoa HOM05D003668 ORTHO05D004242 1.2e-13 79.3 42 78.6
Migut.E00406 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.6e-13 79.0 38 86.8
Peaxi162Scf00119g01535 Petunia axillaris HOM05D003668 ORTHO05D004242 1.6e-13 79.0 39 87.2
SEGI_01615 Sequoiadendron giganteum HOM05D003668 ORTHO05D004242 1.6e-13 79.0 42 81.0
TAR622G1157 Trochodendron aralioides HOM05D003668 ORTHO05D004242 1.6e-13 79.0 41 85.4
CAN.G359.7 Capsicum annuum HOM05D003668 ORTHO05D004242 2.1e-13 78.6 37 91.9
Eucgr.B02885 Eucalyptus grandis HOM05D003668 ORTHO05D004242 2.1e-13 78.6 37 86.5
FvH4_4g32120 Fragaria vesca HOM05D003668 ORTHO05D004242 2.1e-13 78.6 42 78.6
FAN07G1823 Fragaria x ananassa HOM05D003668 ORTHO05D004242 2.1e-13 78.6 42 78.6
FAN12G3685 Fragaria x ananassa HOM05D003668 ORTHO05D004242 2.1e-13 78.6 42 78.6
FAN22G1857 Fragaria x ananassa HOM05D003668 ORTHO05D004242 2.1e-13 78.6 42 78.6
RcHm_v2.0_Chr3g0491751 Rosa chinensis HOM05D003668 ORTHO05D004242 2.1e-13 78.6 42 78.6
MSTRG.884 Avicennia marina HOM05D003668 ORTHO05D004242 2.7e-13 78.2 38 81.6
Gohir.A03G123600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 2.7e-13 78.2 38 86.8
Gohir.D02G146200 Gossypium hirsutum HOM05D003668 ORTHO05D004242 2.7e-13 78.2 38 86.8
Gorai.005G163600 Gossypium raimondii HOM05D003668 ORTHO05D004242 2.7e-13 78.2 38 86.8
TAR629G1414 Trochodendron aralioides HOM05D003668 ORTHO05D004242 2.7e-13 78.2 41 82.9
Oeu004307.1 Olea europaea HOM05D003668 ORTHO05D004242 4.6e-13 77.4 38 89.5
Ciclev10015050m.g Citrus clementina HOM05D003668 ORTHO05D004242 6.0e-13 77.0 38 89.5
Hma1.2p1_0114F.1_g055240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 7.9e-13 76.6 44 77.3
Nn3g18032 Nelumbo nucifera HOM05D003668 ORTHO05D004242 7.9e-13 76.6 42 76.2
Solyc04g007610.3 Solanum lycopersicum HOM05D003668 ORTHO05D004242 7.9e-13 76.6 38 86.8
Sopen04g002690 Solanum pennellii HOM05D003668 ORTHO05D004242 7.9e-13 76.6 38 86.8
Lsat_1_v5_gn_3_54180 Lactuca sativa HOM05D003668 ORTHO05D004242 1.0e-12 76.3 38 89.5
Lsat_1_v5_gn_8_42960 Lactuca sativa HOM05D003668 ORTHO05D004242 1.0e-12 76.3 42 78.6
Oeu044332.1 Olea europaea HOM05D003668 ORTHO05D004242 1.0e-12 76.3 38 86.8
Hma1.2p1_0601F.1_g187240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 1.3e-12 75.9 42 78.6
DCAR_007279 Daucus carota HOM05D003668 ORTHO05D004242 1.8e-12 75.5 38 84.2
HanXRQChr15g0477351 Helianthus annuus HOM05D003668 ORTHO05D004242 1.8e-12 75.5 42 78.6
Migut.L00756 Erythranthe guttata HOM05D003668 ORTHO05D004242 2.3e-12 75.1 38 78.9
HanXRQChr08g0212821 Helianthus annuus HOM05D003668 ORTHO05D004242 2.3e-12 75.1 38 86.8
Os05g0552500 Oryza sativa ssp. japonica HOM05D003668 ORTHO05D004242 3.0e-12 74.7 38 81.6
PSO478G1788 Papaver somniferum HOM05D003668 ORTHO05D004242 3.0e-12 74.7 42 78.6
PGSC0003DMG400005962 Solanum tuberosum HOM05D003668 ORTHO05D004242 3.0e-12 74.7 37 89.2
SGA_v2.0_scaffold50G18529 Striga asiatica HOM05D003668 ORTHO05D004242 3.9e-12 74.3 38 81.6
Zm00001eb295030 Zea mays HOM05D003668 ORTHO05D004242 3.9e-12 74.3 38 76.3
Nitab4.5_0004092g0020 Nicotiana tabacum HOM05D003668 ORTHO05D004242 5.1e-12 73.9 36 88.9
Nitab4.5_0004692g0030 Nicotiana tabacum HOM05D003668 ORTHO05D004242 5.1e-12 73.9 36 88.9
Aa31LG1G80 Aethionema arabicum HOM05D003668 ORTHO05D004242 6.7e-12 73.6 38 81.6
Sed0014721 Sechium edule HOM05D003668 ORTHO05D004242 6.7e-12 73.6 34 91.2
CSS0014668 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 8.7e-12 73.2 39 84.6
ECA246G0677 Erigeron canadensis HOM05D003668 ORTHO05D004242 8.7e-12 73.2 36 86.1
Peaxi162Scf00205g00617 Petunia axillaris HOM05D003668 ORTHO05D004242 8.7e-12 73.2 37 83.8
Migut.L00659 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.1e-11 72.8 38 76.3
SalBow8G3356 Salvia bowleyana HOM05D003668 ORTHO05D004242 1.1e-11 72.8 38 78.9
DCAR_030206 Daucus carota HOM05D003668 ORTHO05D004242 1.5e-11 72.4 38 81.6
HanXRQChr15g0488541 Helianthus annuus HOM05D003668 ORTHO05D004242 1.5e-11 72.4 36 86.1
PSO017G0236 Papaver somniferum HOM05D003668 ORTHO05D004242 1.5e-11 72.4 42 76.2
Psat0s3028g0080 Pisum sativum HOM05D003668 ORTHO05D004242 1.9e-11 72.0 42 81.0
CDE06G0369 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 2.8e-10 68.2 37 75.7
CDE07G1523 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 6.2e-10 67.0 42 69.0
QL01p002329 Quercus lobata HOM05D000125 ORTHO05D000120 1.1e-09 66.2 31 90.3
SHI16328 Sapria himalayana HOM05D003668 ORTHO05D004242 1.1e-09 66.2 45 66.7
Pp3c20_23660 Physcomitrium patens HOM05D003668 ORTHO05D004242 1.4e-09 65.9 35 77.1
Mapoly0013s0166 Marchantia polymorpha HOM05D003668 ORTHO05D004242 1.8e-09 65.5 36 66.7
EL10Ac6g14242 Beta vulgaris HOM05D003668 ORTHO05D004242 2.0e-08 62.0 35 77.1
CBR_g58692 Chara braunii HOM05D003668 ORTHO05D004242 1.7e-07 58.9 41 58.5
SMO092G0001 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 2.9e-07 58.2 36 66.7
Pp3c19_11370 Physcomitrium patens HOM05D003668 ORTHO05D004242 4.2e-06 54.3 43 53.5


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