Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024100 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 3.0e-72 275.0 135 100.0
CSS0030475 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 3.1e-56 221.9 108 100.0
Actinidia11976 Actinidia chinensis HOM05D001114 ORTHO05D000940 1.2e-44 183.3 108 82.4
CSS0018808 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 1.9e-42 176.0 125 70.4
CSS0049399 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 3.3e-42 175.3 108 78.7
Rhsim08G0092900 Rhododendron simsii HOM05D001114 ORTHO05D000940 6.0e-36 154.5 108 71.3
PGSC0003DMG400021438 Solanum tuberosum HOM05D001114 ORTHO05D000940 6.0e-36 154.5 108 71.3
Rhsim10G0126800 Rhododendron simsii HOM05D001114 ORTHO05D000940 1.3e-35 153.3 108 69.4
Solyc02g092230.3 Solanum lycopersicum HOM05D001114 ORTHO05D000940 2.3e-35 152.5 108 71.3
vmacro18021 Vaccinium macrocarpon HOM05D001114 ORTHO05D000940 2.3e-35 152.5 108 69.4
Sed0013868 Sechium edule HOM05D001114 ORTHO05D000940 3.9e-35 151.8 108 67.6
Gorai.007G224700 Gossypium raimondii HOM05D001114 ORTHO05D000940 8.6e-35 150.6 108 72.2
Lj4A163T74 Lonicera japonica HOM05D001114 ORTHO05D000940 8.6e-35 150.6 109 69.7
Lsat_1_v5_gn_3_86641 Lactuca sativa HOM05D001114 ORTHO05D000940 1.1e-34 150.2 109 66.1
Lj7A109T43 Lonicera japonica HOM05D001114 ORTHO05D000940 1.1e-34 150.2 108 67.6
Nitab4.5_0000142g0240 Nicotiana tabacum HOM05D001114 ORTHO05D000940 1.5e-34 149.8 108 70.4
Sopen02g036800 Solanum pennellii HOM05D001114 ORTHO05D000940 2.5e-34 149.1 108 69.4
Peaxi162Scf00548g00226 Petunia axillaris HOM05D001114 ORTHO05D000940 5.6e-34 147.9 108 69.4
SGA_v2.0_scaffold15G07469 Striga asiatica HOM05D001114 ORTHO05D000940 5.6e-34 147.9 108 64.8
Atru.chr3.1030 Acer truncatum HOM05D001114 ORTHO05D000940 7.3e-34 147.5 108 67.6
Dinv26944 Davidia involucrata HOM05D000714 ORTHO05D000940 7.3e-34 147.5 108 68.5
Dinv44945 Davidia involucrata HOM05D001114 ORTHO05D000940 9.6e-34 147.1 104 65.4
Nitab4.5_0003129g0010 Nicotiana tabacum HOM05D001114 ORTHO05D000940 9.6e-34 147.1 108 68.5
DCAR_021463 Daucus carota HOM05D001114 ORTHO05D000940 1.2e-33 146.7 108 66.7
Gohir.D11G209500 Gossypium hirsutum HOM05D001114 ORTHO05D000940 1.6e-33 146.4 108 70.4
Oeu014255.2 Olea europaea HOM05D001114 ORTHO05D000940 2.1e-33 146.0 108 71.3
Cc07_g07200 Coffea canephora HOM05D001114 ORTHO05D000940 2.8e-33 145.6 108 67.6
Manes.12G115900 Manihot esculenta HOM05D001114 ORTHO05D000940 6.2e-33 144.4 108 71.3
CAN.G1075.47 Capsicum annuum HOM05D001114 ORTHO05D000940 1.8e-32 142.9 108 66.7
Aqoxy6G02565 Aquilegia oxysepala HOM05D001114 ORTHO05D000940 4.0e-32 141.7 108 62.0
Nn5g30624 Nelumbo nucifera HOM05D001114 ORTHO05D000940 4.0e-32 141.7 108 66.7
TAR381G0510 Trochodendron aralioides HOM05D001114 ORTHO05D000940 4.0e-32 141.7 108 65.7
Nn1g04514 Nelumbo nucifera HOM05D001114 ORTHO05D000940 5.2e-32 141.4 108 66.7
MD02G1187800 Malus domestica HOM05D001114 ORTHO05D000940 6.9e-32 141.0 108 64.8
Potri.007G005800 Populus trichocarpa HOM05D001114 ORTHO05D000940 6.9e-32 141.0 108 68.5
Ciclev10025731m.g Citrus clementina HOM05D001114 ORTHO05D000940 8.9e-32 140.6 108 65.7
Duzib147G0936 Durio zibethinus HOM05D001114 ORTHO05D000940 8.9e-32 140.6 108 64.8
MBI16_g18974_MAGBIO Magnolia biondii HOM05D001114 ORTHO05D000940 2.0e-31 139.4 108 64.8
Zm00001eb009430 Zea mays HOM05D001114 ORTHO05D000940 2.0e-31 139.4 108 59.3
vmacro05420 Vaccinium macrocarpon HOM05D001114 ORTHO05D000940 2.6e-31 139.0 109 67.0
Gohir.A11G213900 Gossypium hirsutum HOM05D001114 ORTHO05D000940 3.4e-31 138.7 108 67.6
Duzib187G1244 Durio zibethinus HOM05D001114 ORTHO05D000940 5.8e-31 137.9 108 63.9
Prupe.6G219200 Prunus persica HOM05D001114 ORTHO05D000940 5.8e-31 137.9 108 62.0
Cpa.g.sc6.2 Carica papaya HOM05D001114 ORTHO05D000940 7.6e-31 137.5 108 65.7
AUR62004021 Chenopodium quinoa HOM05D001114 ORTHO05D000940 7.6e-31 137.5 108 59.3
CiPaw.01G003300 Carya illinoinensis HOM05D001114 ORTHO05D000940 9.9e-31 137.1 108 65.7
AUR62007529 Chenopodium quinoa HOM05D001114 ORTHO05D000940 9.9e-31 137.1 108 59.3
RcHm_v2.0_Chr2g0108351 Rosa chinensis HOM05D001114 ORTHO05D000940 9.9e-31 137.1 108 64.8
FAN28G0606 Fragaria x ananassa HOM05D001114 ORTHO05D000940 2.9e-30 135.6 109 64.2
MD15G1298700 Malus domestica HOM05D001114 ORTHO05D000940 2.9e-30 135.6 108 62.0
Haze_15270 Corylus avellana HOM05D001114 ORTHO05D000940 8.4e-30 134.0 108 63.0
FvH4_1g17920 Fragaria vesca HOM05D001114 ORTHO05D000940 8.4e-30 134.0 108 63.9
FAN13G1119 Fragaria x ananassa HOM05D001114 ORTHO05D000940 8.4e-30 134.0 108 63.9
FAN19G2658 Fragaria x ananassa HOM05D001114 ORTHO05D000940 8.4e-30 134.0 108 63.9
FAN23G2663 Fragaria x ananassa HOM05D001114 ORTHO05D000940 8.4e-30 134.0 108 63.9
FAN26G2805 Fragaria x ananassa HOM05D001114 ORTHO05D000940 8.4e-30 134.0 108 63.9
MELO3C007646.2 Cucumis melo HOM05D001114 ORTHO05D000940 1.9e-29 132.9 108 61.1
Potri.014G006000 Populus trichocarpa HOM05D001114 ORTHO05D000940 1.9e-29 132.9 108 66.7
FAN28G1432 Fragaria x ananassa HOM05D001114 ORTHO05D000940 2.4e-29 132.5 108 63.0
Sabra14G0005700 Salix brachista HOM05D001114 ORTHO05D000940 3.2e-29 132.1 108 65.7
Thecc.01G074100 Theobroma cacao HOM05D001114 ORTHO05D000940 3.2e-29 132.1 108 61.1
Haze_22420 Corylus avellana HOM05D001114 ORTHO05D000940 5.4e-29 131.3 113 57.5
CsaV3_6G044210 Cucumis sativus L. HOM05D001114 ORTHO05D000940 5.4e-29 131.3 108 60.2
Migut.H00338 Erythranthe guttata HOM05D001114 ORTHO05D000940 1.2e-28 130.2 108 63.0
GSVIVG01009324001 Vitis vinifera HOM05D001114 ORTHO05D000940 1.2e-28 130.2 116 56.9
unitig_52.g17606 Utricularia gibba HOM05D001114 ORTHO05D000940 1.6e-28 129.8 108 63.0
COL.COLO4_11592 Corchorus olitorius HOM05D001114 ORTHO05D000940 2.1e-28 129.4 108 61.1
Gorai.003G031300 Gossypium raimondii HOM05D001114 ORTHO05D000940 2.1e-28 129.4 107 61.7
Ca_24679_v3 Cicer arietinum L. HOM05D001114 ORTHO05D000940 2.7e-28 129.0 108 63.9
Psat2g171840 Pisum sativum HOM05D001114 ORTHO05D000940 3.5e-28 128.6 108 63.9
Sabra07G0004100 Salix brachista HOM05D001114 ORTHO05D000940 4.6e-28 128.3 114 60.5
Gohir.D03G029700 Gossypium hirsutum HOM05D001114 ORTHO05D000940 6.0e-28 127.9 107 60.7
Actinidia32843 Actinidia chinensis HOM05D001114 ORTHO05D000940 1.0e-27 127.1 108 63.0
Cfa013763 Carpinus fangiana HOM05D001114 ORTHO05D000940 1.3e-27 126.7 113 56.6
ClCG01G017680 Citrullus lanatus HOM05D001114 ORTHO05D000940 2.3e-27 125.9 108 58.3
QL06p039421 Quercus lobata HOM05D001114 ORTHO05D000940 2.3e-27 125.9 108 60.2
TPR.G9334 Trifolium pratense HOM05D001114 ORTHO05D000940 2.3e-27 125.9 108 63.0
Hma1.2p1_0852F.1_g228650 Hydrangea macrophylla HOM05D001114 ORTHO05D000940 6.6e-27 124.4 92 67.4
Manes.13G110400 Manihot esculenta HOM05D001114 ORTHO05D000940 8.7e-27 124.0 108 63.9
Lj2g0017513 Lotus japonicus HOM05D001114 ORTHO05D000940 1.9e-26 122.9 108 62.0
Gohir.A11G048700 Gossypium hirsutum HOM05D001114 ORTHO05D000940 3.3e-26 122.1 108 57.4
Duzib264G0544 Durio zibethinus HOM05D001114 ORTHO05D000940 4.3e-26 121.7 108 59.3
EL10Ac6g15609 Beta vulgaris HOM05D001114 ORTHO05D000940 7.3e-26 120.9 108 55.6
Gohir.D11G052300 Gossypium hirsutum HOM05D001114 ORTHO05D000940 7.3e-26 120.9 108 56.5
Hund16408 Selenicereus undatus HOM05D001114 ORTHO05D000940 7.3e-26 120.9 108 59.3
Gohir.A02G150700 Gossypium hirsutum HOM05D001114 ORTHO05D000940 9.6e-26 120.6 107 57.0
Lalb_Chr05g0213761 Lupinus albus HOM05D001114 ORTHO05D000940 9.6e-26 120.6 108 59.3
Lalb_Chr16g0378931 Lupinus albus HOM05D001114 ORTHO05D000940 9.6e-26 120.6 108 58.3
Gorai.007G056700 Gossypium raimondii HOM05D001114 ORTHO05D000940 1.3e-25 120.2 108 55.6
Oeu011984.1 Olea europaea HOM05D001114 ORTHO05D000940 2.1e-25 119.4 110 55.5
GSVIVG01006023001 Vitis vinifera HOM05D001114 ORTHO05D000940 2.1e-25 119.4 108 56.5
CDE06G2762 Ceratophyllum demersum HOM05D001114 ORTHO05D000940 2.8e-25 119.0 108 53.7
ECA246G4652 Erigeron canadensis HOM05D001114 ORTHO05D000940 3.6e-25 118.6 109 58.7
Lj4A72T41 Lonicera japonica HOM05D001114 ORTHO05D000940 6.2e-25 117.9 108 54.6
Ah.05g167040 Amaranthus hybridus HOM05D001114 ORTHO05D000940 8.1e-25 117.5 108 52.8
Eucgr.I00694 Eucalyptus grandis HOM05D001114 ORTHO05D000940 1.4e-24 116.7 108 57.4
VMungo1215G3072 Vigna mungo HOM05D001114 ORTHO05D000940 1.4e-24 116.7 108 58.3
MSTRG.2816 Avicennia marina HOM05D001114 ORTHO05D000940 1.8e-24 116.3 108 54.6
Thhalv10025437m.g Eutrema salsugineum HOM05D001114 ORTHO05D000940 2.4e-24 115.9 109 56.9
C07p62560 Brassica napus HOM05D001114 ORTHO05D000940 3.1e-24 115.5 109 55.0
Glyma.01G194900 Glycine max HOM05D001114 ORTHO05D000940 3.1e-24 115.5 94 63.8
Sc03g0002440 Simmondsia chinensis HOM05D001114 ORTHO05D000940 3.1e-24 115.5 108 54.6
AL7G13090 Arabidopsis lyrata HOM05D001114 ORTHO05D000940 5.3e-24 114.8 109 56.0
AT4G37680 Arabidopsis thaliana HOM05D001114 ORTHO05D000940 5.3e-24 114.8 109 56.0
BcaNung02081 Brassica carinata HOM05D001114 ORTHO05D000940 6.9e-24 114.4 109 55.0
Oeu032427.1 Olea europaea HOM05D001114 ORTHO05D000940 6.9e-24 114.4 106 57.5
AT4G38320 Arabidopsis thaliana HOM05D001114 ORTHO05D000940 1.2e-23 113.6 109 55.0
A01p01330 Brassica napus HOM05D001114 ORTHO05D000940 1.2e-23 113.6 109 56.0
BolC7t46671H Brassica oleracea HOM05D001114 ORTHO05D000940 1.2e-23 113.6 109 55.0
BraA01t00130Z Brassica rapa HOM05D001114 ORTHO05D000940 1.2e-23 113.6 109 56.0
HPP92_003665 Vanilla planifolia HOM05D001114 ORTHO05D000940 1.5e-23 113.2 107 50.5
EL10Ac1g02366 Beta vulgaris HOM05D001114 ORTHO05D000940 2.0e-23 112.8 103 53.4
BcaNung05785 Brassica carinata HOM05D001114 ORTHO05D000940 2.0e-23 112.8 109 56.0
C01p01490 Brassica napus HOM05D001114 ORTHO05D000940 2.0e-23 112.8 109 56.0
BolC1t00146H Brassica oleracea HOM05D001114 ORTHO05D000940 2.0e-23 112.8 109 56.0
Sp7g35330 Schrenkiella parvula HOM05D001114 ORTHO05D000940 2.0e-23 112.8 109 55.0
arahy.Tifrunner.gnm1.ann1.ALJH5D Arachis hypogaea HOM05D001114 ORTHO05D000940 2.6e-23 112.5 108 58.3
arahy.Tifrunner.gnm1.ann1.X02P63 Arachis hypogaea HOM05D001114 ORTHO05D000940 2.6e-23 112.5 108 58.3
BcaNung02079 Brassica carinata HOM05D001114 ORTHO05D002792 2.6e-23 112.5 110 54.5
Nitab4.5_0007023g0020 Nicotiana tabacum HOM05D001114 ORTHO05D000940 2.6e-23 112.5 108 54.6
CARHR246060 Cardamine hirsuta HOM05D001114 ORTHO05D000940 3.4e-23 112.1 109 56.0
TWI39G1053 Tripterygium wilfordii HOM05D001114 ORTHO05D000940 3.4e-23 112.1 108 57.4
CSS0006963 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 4.5e-23 111.7 116 50.0
Carub.0007s0259 Capsella rubella HOM05D001114 ORTHO05D000940 4.5e-23 111.7 109 55.0
Os03g0232900 Oryza sativa ssp. japonica HOM05D001114 ORTHO05D000940 4.5e-23 111.7 108 50.9
FvH4_5g20320 Fragaria vesca HOM05D001114 ORTHO05D000940 5.8e-23 111.3 107 54.2
FAN18G4086 Fragaria x ananassa HOM05D001114 ORTHO05D000940 5.8e-23 111.3 107 54.2
FAN13G0654 Fragaria x ananassa HOM05D001114 ORTHO05D000940 7.6e-23 110.9 107 54.2
Medtr5g015270 Medicago truncatula HOM05D001114 ORTHO05D000940 7.6e-23 110.9 108 59.3
arahy.Tifrunner.gnm1.ann1.L6NNIX Arachis hypogaea HOM05D001114 ORTHO05D000940 9.9e-23 110.5 108 57.4
BcaNung05786 Brassica carinata HOM05D001114 ORTHO05D000940 9.9e-23 110.5 109 55.0
A03p65460 Brassica napus HOM05D001114 ORTHO05D000940 9.9e-23 110.5 109 54.1
BraA03t15598Z Brassica rapa HOM05D001114 ORTHO05D000940 9.9e-23 110.5 109 54.1
CDE04G2644 Ceratophyllum demersum HOM05D001114 ORTHO05D000940 9.9e-23 110.5 108 48.1
FAN08G2233 Fragaria x ananassa HOM05D001114 ORTHO05D000940 9.9e-23 110.5 107 53.3
RcHm_v2.0_Chr7g0205491 Rosa chinensis HOM05D001114 ORTHO05D000940 9.9e-23 110.5 107 55.1
CiPaw.08G050700 Carya illinoinensis HOM05D001114 ORTHO05D000940 1.3e-22 110.2 106 54.7
AUR62041659 Chenopodium quinoa HOM05D001114 ORTHO05D000940 1.3e-22 110.2 104 53.8
Aa31LG6G14580 Aethionema arabicum HOM05D001114 ORTHO05D000940 3.8e-22 108.6 109 53.2
arahy.Tifrunner.gnm1.ann1.SP0UUF Arachis hypogaea HOM05D001114 ORTHO05D000940 4.9e-22 108.2 108 56.5
Phvul.002G010000 Phaseolus vulgaris HOM05D001114 ORTHO05D000940 4.9e-22 108.2 94 58.5
PGSC0003DMG400009091 Solanum tuberosum HOM05D001114 ORTHO05D000940 6.4e-22 107.8 108 51.9
Lj1g0021795 Lotus japonicus HOM05D001114 ORTHO05D000940 1.4e-21 106.7 97 57.7
Glyma.06G047200 Glycine max HOM05D001114 ORTHO05D000940 1.9e-21 106.3 96 55.2
Manes.05G182500 Manihot esculenta HOM05D001114 ORTHO05D000940 1.9e-21 106.3 102 52.9
Nitab4.5_0001417g0020 Nicotiana tabacum HOM05D001114 ORTHO05D000940 2.4e-21 105.9 108 51.9
Sopen03g007750 Solanum pennellii HOM05D000004 ORTHO05D000940 3.2e-21 105.5 108 51.9
PGR004G0920 Punica granatum HOM05D001114 ORTHO05D000940 4.2e-21 105.1 108 52.8
CANSAT01G0260 Cannabis sativa HOM05D001114 ORTHO05D000940 5.4e-21 104.8 108 55.6
ATR0739G029 Amborella trichopoda HOM05D001114 ORTHO05D000940 2.7e-20 102.4 108 50.0
MD06G1047400 Malus domestica HOM05D001114 ORTHO05D000940 2.7e-20 102.4 108 52.8
MSTRG.23664 Avicennia marina HOM05D001114 ORTHO05D000940 3.5e-20 102.1 106 51.9
THA.LOC104807634 Tarenaya hassleriana HOM05D001114 ORTHO05D000940 3.5e-20 102.1 109 53.2
Glyma.11G046900 Glycine max HOM05D001114 ORTHO05D000940 4.6e-20 101.7 108 54.6
Medtr3g103240 Medicago truncatula HOM05D001114 ORTHO05D000940 4.6e-20 101.7 95 53.7
Solyc03g043930.4 Solanum lycopersicum HOM05D001114 ORTHO05D000940 6.0e-20 101.3 108 50.9
Glyma.04G046500 Glycine max HOM05D001114 ORTHO05D000940 7.9e-20 100.9 116 48.3
Phvul.009G072600 Phaseolus vulgaris HOM05D001114 ORTHO05D000940 7.9e-20 100.9 96 54.2
MD04G1053000 Malus domestica HOM05D001114 ORTHO05D000940 1.0e-19 100.5 108 51.9
Hund31317 Selenicereus undatus HOM05D001114 ORTHO05D000940 3.0e-19 99.0 112 54.5
Psat5g037920 Pisum sativum HOM05D000323 ORTHO05D000940 8.7e-19 97.4 96 52.1
Peaxi162Scf00118g01712 Petunia axillaris HOM05D001114 ORTHO05D000940 1.1e-18 97.1 108 50.9
arahy.Tifrunner.gnm1.ann1.0EU6RV Arachis hypogaea HOM05D001114 ORTHO05D000940 1.9e-18 96.3 96 53.1
PSO017G6169 Papaver somniferum HOM05D001114 ORTHO05D000940 4.3e-18 95.1 108 52.8
BcaNung05787 Brassica carinata HOM05D001114 ORTHO05D000940 7.4e-18 94.4 101 51.5
Prupe.5G057500 Prunus persica HOM05D001114 ORTHO05D000940 7.4e-18 94.4 108 47.2
PSO170G6020 Papaver somniferum HOM05D001114 ORTHO05D000940 1.3e-17 93.6 108 51.9
AUR62022467 Chenopodium quinoa HOM05D001114 ORTHO05D000940 4.8e-17 91.7 92 52.2
Ciclev10001488m.g Citrus clementina HOM05D001114 ORTHO05D000940 9.0e-16 87.4 91 50.5
HanXRQChr15g0472581 Helianthus annuus HOM05D001114 ORTHO05D000940 1.7e-14 83.2 108 46.3
arahy.Tifrunner.gnm1.ann1.YK8V62 Arachis hypogaea HOM05D001114 ORTHO05D000940 4.9e-14 81.6 79 55.7
Atru.chr13.846 Acer truncatum HOM05D001114 ORTHO05D000940 9.3e-13 77.4 82 52.4
CAN.G153.2 Capsicum annuum HOM05D001114 ORTHO05D000940 2.3e-11 72.8 78 48.7
TPR.G33698 Trifolium pratense HOM05D001114 ORTHO05D000940 3.3e-10 68.9 103 42.7
VMungo1309G0934 Vigna mungo HOM05D001114 ORTHO05D000940 7.4e-10 67.8 75 48.0
Ah.03g140590 Amaranthus hybridus HOM05D001114 ORTHO05D000940 9.6e-10 67.4 115 35.7
MD04G1052800 Malus domestica HOM05D001114 ORTHO05D000940 2.1e-09 66.2 86 44.2
Actinidia19307 Actinidia chinensis HOM05D000323 ORTHO05D000201 5.3e-08 61.6 111 35.1
Actinidia10208 Actinidia chinensis HOM05D001114 ORTHO05D000940 1.2e-07 60.5 73 43.8
Pp3c9_10980 Physcomitrium patens HOM05D001114 ORTHO05D000940 1.2e-07 60.5 68 51.5
SEGI_37640 Sequoiadendron giganteum HOM05D001114 ORTHO05D000940 2.6e-07 59.3 112 35.7
DCAR_021464 Daucus carota HOM05D001114 ORTHO05D000940 7.6e-07 57.8 108 33.3
Pp3c15_17020 Physcomitrium patens HOM05D001114 ORTHO05D000940 7.6e-07 57.8 73 43.8
Mapoly0021s0058 Marchantia polymorpha HOM05D001114 ORTHO05D000940 2.2e-06 56.2 55 50.9


User provided reference genes

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