Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024099 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 3.0e-57 224.9 111 100.0
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 4.8e-39 164.5 80 98.8
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 1.4e-30 136.3 80 82.5
Hma1.2p1_0174F.1_g076690 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 1.4e-30 136.3 80 82.5
TAR633G0041 Trochodendron aralioides HOM05D003003 ORTHO05D008343 2.4e-30 135.6 80 80.0
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 3.1e-30 135.2 80 80.0
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 4.0e-30 134.8 80 76.2
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 4.0e-30 134.8 80 78.8
Sc22g0001890 Simmondsia chinensis HOM05D003003 ORTHO05D008343 6.9e-30 134.0 80 76.2
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 9.0e-30 133.7 80 76.2
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 1.2e-29 133.3 80 76.2
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 2.0e-29 132.5 80 75.0
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 2.0e-29 132.5 80 75.0
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 2.0e-29 132.5 80 80.0
arahy.Tifrunner.gnm1.ann1.7LY3NN Arachis hypogaea HOM05D003003 ORTHO05D008343 2.6e-29 132.1 80 75.0
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 2.6e-29 132.1 80 76.2
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 3.4e-29 131.7 86 76.7
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 4.5e-29 131.3 80 76.2
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 5.8e-29 131.0 80 75.0
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 5.8e-29 131.0 80 75.0
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 5.8e-29 131.0 80 73.8
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 7.6e-29 130.6 80 76.2
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 1.3e-28 129.8 80 76.2
RcHm_v2.0_Chr3g0460061 Rosa chinensis HOM05D003003 ORTHO05D008343 1.3e-28 129.8 78 75.6
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 2.2e-28 129.0 80 76.2
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 2.9e-28 128.6 86 70.9
Actinidia11485 Actinidia chinensis HOM05D000166 ORTHO05D001348 4.9e-28 127.9 80 75.0
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 6.4e-28 127.5 86 70.9
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 8.4e-28 127.1 80 73.8
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 8.4e-28 127.1 78 73.1
FAN05G1701 Fragaria x ananassa HOM05D003003 ORTHO05D008343 8.4e-28 127.1 78 73.1
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 8.4e-28 127.1 78 73.1
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 8.4e-28 127.1 80 72.5
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 1.1e-27 126.7 75 78.7
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 1.4e-27 126.3 80 75.0
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 1.9e-27 125.9 78 75.6
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 1.9e-27 125.9 87 71.3
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 2.4e-27 125.6 81 75.3
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 3.2e-27 125.2 78 75.6
FAN02G2939 Fragaria x ananassa HOM05D003003 ORTHO05D008343 3.2e-27 125.2 78 73.1
Lj1g0019401 Lotus japonicus HOM05D003003 ORTHO05D008343 3.2e-27 125.2 80 73.8
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 4.2e-27 124.8 87 71.3
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 5.5e-27 124.4 80 73.8
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 7.1e-27 124.0 97 67.0
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 9.3e-27 123.6 80 71.2
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 1.2e-26 123.2 81 69.1
Psat3g117440 Pisum sativum HOM05D003003 ORTHO05D008343 1.6e-26 122.9 81 72.8
Lj1g0016212 Lotus japonicus HOM05D003003 ORTHO05D008343 2.1e-26 122.5 80 75.0
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 2.1e-26 122.5 81 72.8
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 2.1e-26 122.5 86 68.6
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 2.7e-26 122.1 80 70.0
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 2.7e-26 122.1 86 69.8
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 2.7e-26 122.1 86 69.8
unitig_27.g24893 Utricularia gibba HOM05D003003 ORTHO05D008343 6.0e-26 120.9 81 71.6
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 7.9e-26 120.6 74 74.3
TWI74G0515 Tripterygium wilfordii HOM05D003003 ORTHO05D008343 1.3e-25 119.8 81 71.6
Cfa017002 Carpinus fangiana HOM05D003003 ORTHO05D008343 1.8e-25 119.4 75 73.3
MSTRG.18930 Avicennia marina HOM05D003003 ORTHO05D008343 6.7e-25 117.5 78 70.5
QL07p031297 Quercus lobata HOM05D003003 ORTHO05D008343 6.7e-25 117.5 80 72.5
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 6.7e-25 117.5 80 72.5
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 7.4e-24 114.0 88 62.5
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 9.6e-24 113.6 76 69.7
Sed0015775 Sechium edule HOM05D003003 ORTHO05D008343 1.6e-23 112.8 80 66.2
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 3.7e-23 111.7 82 67.1
SGA_v2.0_scaffold2144G54083 Striga asiatica HOM05D003003 ORTHO05D008343 3.7e-23 111.7 80 66.2
SGA_v2.0_scaffold373G50193 Striga asiatica HOM05D003003 ORTHO05D008343 3.7e-23 111.7 80 66.2
Thhalv10008400m.g Eutrema salsugineum HOM05D003003 ORTHO05D008343 8.2e-23 110.5 84 65.5
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 1.1e-22 110.2 84 64.3
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 1.1e-22 110.2 84 65.5
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.1e-22 110.2 84 65.5
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.1e-22 110.2 84 65.5
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 3.1e-22 108.6 80 61.2
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 4.0e-22 108.2 85 62.4
PSO017G2464 Papaver somniferum HOM05D003003 ORTHO05D008343 2.0e-21 105.9 76 67.1
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 3.4e-21 105.1 84 63.1
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 5.8e-21 104.4 84 61.9
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 5.8e-21 104.4 85 60.0
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 7.6e-21 104.0 67 74.6
Rhsim04G0150500 Rhododendron simsii HOM05D003003 ORTHO05D008343 7.6e-21 104.0 80 63.8
Aqoxy4G03302 Aquilegia oxysepala HOM05D003003 ORTHO05D008343 1.0e-20 103.6 79 60.8
Os05g0481000 Oryza sativa ssp. japonica HOM05D003003 ORTHO05D008343 1.0e-20 103.6 75 66.7
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 1.7e-20 102.8 85 60.0
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 1.7e-20 102.8 76 65.8
FAN14G0728 Fragaria x ananassa HOM05D003003 ORTHO05D008343 4.9e-20 101.3 60 76.7
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 4.9e-20 101.3 61 78.7
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 6.5e-20 100.9 79 60.8
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 8.4e-20 100.5 61 78.7
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 1.1e-19 100.1 61 80.3
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 1.4e-19 99.8 63 77.8
Zm00001eb290780 Zea mays HOM05D003003 ORTHO05D008343 1.4e-19 99.8 75 64.0
HPP92_019756 Vanilla planifolia HOM05D003003 ORTHO05D008343 3.5e-18 95.1 118 46.6
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 6.0e-18 94.4 77 58.4
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 7.9e-18 94.0 81 56.8
MD04G1177200 Malus domestica HOM05D003003 ORTHO05D008343 1.8e-17 92.8 85 55.3
FAN09G1188 Fragaria x ananassa HOM05D003003 ORTHO05D008343 3.0e-17 92.0 60 70.0
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 3.0e-17 92.0 81 54.3
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 8.7e-17 90.5 84 54.8
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 8.7e-17 90.5 61 77.0
ATR1127G143 Amborella trichopoda HOM05D003003 ORTHO05D008343 1.5e-16 89.7 75 58.7
Cpa.g.sc72.27 Carica papaya HOM05D003003 ORTHO05D008343 1.5e-16 89.7 56 73.2
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 1.9e-16 89.4 86 53.5
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 1.9e-16 89.4 86 53.5
Rhsim09G0022100 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.6e-15 86.3 49 77.6
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 8.2e-15 84.0 46 78.3
Lsat_1_v5_gn_8_123140 Lactuca sativa HOM05D003003 ORTHO05D008343 2.6e-13 79.0 41 85.4
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 1.7e-12 76.3 41 82.9
Mapoly0166s0017 Marchantia polymorpha HOM05D003003 ORTHO05D008343 2.2e-12 75.9 99 42.4
MELO3C025253.2 Cucumis melo HOM05D003003 ORTHO05D008343 3.8e-12 75.1 41 80.5
Pp3c11_26820 Physcomitrium patens HOM05D003003 ORTHO05D008343 1.9e-11 72.8 72 52.8
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 4.2e-11 71.6 76 46.1
SMO336G0035 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 4.2e-11 71.6 76 46.1
CBR_g38036 Chara braunii HOM05D003003 ORTHO05D008343 3.9e-09 65.1 108 35.2
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 8.8e-09 63.9 90 41.1


User provided reference genes

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