Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.3e-126 456.4 233 100.0
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.2e-126 453.8 233 99.6
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.9e-104 380.6 231 83.1
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.3e-83 312.8 243 66.7
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 3.0e-75 285.8 231 64.1
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 5.1e-75 285.0 231 62.8
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 3.3e-74 282.3 234 61.5
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 2.2e-70 269.6 231 62.8
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 1.9e-69 266.5 234 58.1
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.4e-69 266.2 235 60.9
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 9.3e-69 264.2 231 60.6
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 9.3e-69 264.2 231 60.6
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 2.3e-67 259.6 228 57.0
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 6.6e-67 258.1 231 60.2
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.5e-66 256.9 264 56.1
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 5.3e-64 248.4 237 54.9
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 2.0e-63 246.5 228 55.7
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 2.6e-63 246.1 231 55.4
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 4.5e-63 245.4 225 55.1
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.7e-62 243.4 231 55.0
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.2e-62 243.0 228 55.7
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 8.4e-62 241.1 238 54.6
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.1e-61 240.7 221 55.2
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 7.1e-61 238.0 231 52.8
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 2.1e-60 236.5 231 52.8
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 3.5e-60 235.7 218 54.6
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.3e-59 233.8 231 49.8
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 2.3e-59 233.0 231 52.4
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 3.9e-59 232.3 221 55.7
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 3.3e-58 229.2 235 52.3
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 7.4e-58 228.0 233 51.9
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.3e-57 227.3 207 55.6
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 6.2e-57 224.9 215 55.8
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.5e-55 220.3 222 50.0
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 2.0e-55 219.9 231 49.8
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 7.6e-55 218.0 222 50.9
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.7e-54 216.9 222 50.9
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 4.9e-54 215.3 222 49.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.9e-54 215.3 232 49.6
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 8.4e-54 214.5 232 49.6
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 1.4e-53 213.8 222 47.7
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 7.9e-52 208.0 224 48.2
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.0e-51 207.6 234 45.7
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.3e-51 207.2 218 48.6
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.8e-51 206.8 231 48.1
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.3e-51 206.5 231 48.1
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 3.9e-51 205.7 229 51.1
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.1e-50 204.1 232 45.7
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.9e-50 203.4 233 48.5
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.9e-50 203.4 235 45.5
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 2.5e-50 203.0 222 48.2
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 9.6e-50 201.1 221 47.5
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.3e-49 200.7 221 49.3
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.6e-49 200.3 232 47.4
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 2.8e-49 199.5 224 46.9
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 3.7e-49 199.1 224 46.4
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 4.8e-49 198.7 231 48.1
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 4.8e-49 198.7 241 43.6
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 6.2e-49 198.4 192 55.2
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 3.1e-48 196.1 242 46.3
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.5e-47 193.7 224 46.4
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 1.5e-47 193.7 222 45.9
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.5e-47 193.7 222 48.6
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 5.8e-47 191.8 231 45.5
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 7.6e-47 191.4 232 44.4
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 1.0e-46 191.0 160 62.5
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.3e-46 190.7 251 41.4
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.3e-46 190.7 225 44.4
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.7e-46 190.3 228 45.6
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.7e-46 190.3 228 45.6
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 3.8e-46 189.1 222 45.0
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 6.5e-46 188.3 223 45.7
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 6.5e-46 188.3 223 45.7
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 6.5e-46 188.3 223 45.7
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.4e-45 187.2 222 46.8
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 3.2e-45 186.0 222 44.6
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 4.2e-45 185.7 210 48.1
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 5.5e-45 185.3 207 46.9
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 7.1e-45 184.9 222 45.5
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 1.2e-44 184.1 222 44.6
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.7e-44 183.0 216 46.8
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 3.5e-44 182.6 218 42.7
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 4.6e-44 182.2 234 43.6
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 6.0e-44 181.8 242 43.0
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 1.3e-43 180.6 233 45.1
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.8e-43 180.3 220 47.7
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 1.8e-43 180.3 222 44.1
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 8.7e-43 177.9 217 46.5
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 1.1e-42 177.6 181 50.3
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.9e-42 176.8 224 46.9
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 4.3e-42 175.6 242 41.3
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.7e-42 175.3 227 42.3
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.3e-41 174.1 220 45.9
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.6e-41 173.7 209 45.9
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 3.7e-41 172.6 221 41.6
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 6.3e-41 171.8 224 43.8
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.4e-40 170.6 244 40.2
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.4e-40 169.9 220 45.9
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.1e-40 169.1 227 41.9
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 6.9e-40 168.3 232 42.2
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 9.0e-40 167.9 290 38.6
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 2.0e-39 166.8 256 41.8
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.7e-38 163.7 231 42.9
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.2e-38 163.3 211 42.2
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 8.5e-38 161.4 252 40.5
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.1e-37 161.0 174 48.9
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 4.2e-37 159.1 229 41.0
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 4.2e-37 159.1 229 41.0
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 4.6e-36 155.6 210 43.3
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 4.6e-36 155.6 210 43.3
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.1e-34 151.0 218 39.4
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 1.5e-34 150.6 237 40.1
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 7.4e-34 148.3 223 39.0
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.3e-33 147.5 225 33.8
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 4.8e-33 145.6 209 39.7
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 2.4e-32 143.3 217 36.4
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 2.0e-31 140.2 217 43.3
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.7e-31 138.3 220 36.4
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.3e-30 137.5 244 33.6
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 3.8e-30 136.0 121 60.3
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.4e-29 134.0 116 56.0
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.2e-28 131.0 228 36.0
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.6e-28 130.6 134 50.7
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.6e-26 123.2 76 78.9
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.7e-25 119.4 175 36.6
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 6.9e-24 115.2 78 71.8
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 9.1e-24 114.8 91 61.5
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 4.5e-23 112.5 186 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.0e-22 111.3 211 30.3
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.7e-22 110.5 81 61.7
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.2e-21 106.3 138 44.9
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 9.4e-21 104.8 221 26.7
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.6e-20 104.0 82 59.8
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 2.0e-18 97.1 112 48.2
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 9.7e-18 94.7 101 48.5
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 4.8e-17 92.4 164 34.1
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 7.0e-16 88.6 56 75.0
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 7.0e-16 88.6 56 75.0
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 9.1e-16 88.2 122 36.9
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 3.5e-15 86.3 104 44.2
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.7e-14 84.0 182 28.0
Actinidia12203 Actinidia chinensis HOM05D005427 ORTHO05D006461 3.3e-10 69.7 59 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 4.4e-10 69.3 128 33.6
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.7e-09 67.4 63 44.4
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 4.8e-09 65.9 62 58.1
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 7.0e-08 62.0 229 25.3
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 9.1e-08 61.6 214 23.4


User provided reference genes

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