Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 9.0e-81 303.5 153 100.0
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.1e-69 265.8 153 85.0
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 2.7e-69 265.4 153 82.4
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 3.6e-69 265.0 153 83.7
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 6.1e-69 264.2 153 83.0
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 7.9e-69 263.8 153 81.0
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.0e-68 263.5 153 84.3
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.4e-68 263.1 153 81.0
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 5.1e-68 261.2 153 79.1
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.8e-68 260.4 153 81.7
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 81.0
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 1.1e-67 260.0 153 83.0
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 1.5e-67 259.6 151 79.5
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 1.5e-67 259.6 153 82.4
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.5e-67 259.6 152 82.2
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.0e-67 259.2 153 83.7
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 2.6e-67 258.8 150 80.0
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 7.4e-67 257.3 153 81.7
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 7.4e-67 257.3 151 78.1
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 9.7e-67 256.9 150 82.0
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 9.7e-67 256.9 151 80.8
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 9.7e-67 256.9 153 79.1
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.3e-66 256.5 153 77.8
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-66 256.5 148 83.8
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.7e-66 256.1 151 80.8
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 2.2e-66 255.8 153 80.4
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 78.4
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 78.4
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 2.8e-66 255.4 153 79.1
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.7e-66 255.0 151 80.8
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 4.8e-66 254.6 151 80.8
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 4.8e-66 254.6 153 80.4
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 79.7
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 77.8
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.2e-66 253.8 151 80.1
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 8.2e-66 253.8 153 78.4
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.1e-65 253.4 153 81.0
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.4e-65 253.1 151 78.1
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.4e-65 253.1 153 80.4
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.8e-65 252.7 153 79.1
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 1.8e-65 252.7 153 79.1
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 3.1e-65 251.9 150 79.3
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 3.1e-65 251.9 150 80.0
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 4.1e-65 251.5 150 79.3
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 4.1e-65 251.5 153 79.1
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 4.1e-65 251.5 151 77.5
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 5.3e-65 251.1 150 80.0
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 1.2e-64 250.0 151 79.5
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.2e-64 250.0 151 80.1
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.2e-64 250.0 151 79.5
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 1.2e-64 250.0 152 79.6
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.2e-64 250.0 151 78.8
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.6e-64 249.6 153 77.8
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.6e-64 249.6 152 77.6
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 2.0e-64 249.2 151 78.8
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.0e-64 249.2 153 77.8
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 77.8
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-64 248.8 150 78.7
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 2.6e-64 248.8 153 77.8
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 3.5e-64 248.4 153 77.1
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 4.5e-64 248.1 145 81.4
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 7.7e-64 247.3 155 78.1
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 7.7e-64 247.3 151 78.1
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 7.7e-64 247.3 153 77.1
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 7.7e-64 247.3 153 75.8
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 7.7e-64 247.3 153 77.8
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 7.7e-64 247.3 145 80.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.0e-63 246.9 150 78.0
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 1.0e-63 246.9 151 79.5
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.0e-63 246.9 153 79.1
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.2e-63 245.7 153 73.9
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 2.2e-63 245.7 153 75.2
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 2.9e-63 245.4 155 76.8
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 5.0e-63 244.6 150 76.0
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 5.0e-63 244.6 153 77.8
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 5.0e-63 244.6 152 78.9
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 5.0e-63 244.6 151 75.5
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 8.5e-63 243.8 153 76.5
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.1e-62 243.4 153 77.1
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.1e-62 243.4 154 76.6
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.1e-62 243.4 153 78.4
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.1e-62 243.4 153 75.2
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.5e-62 243.0 153 75.2
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.5e-62 243.0 150 80.7
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 1.9e-62 242.7 150 79.3
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 2.5e-62 242.3 148 81.8
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.2e-62 241.9 153 76.5
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 3.2e-62 241.9 151 77.5
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 4.2e-62 241.5 151 77.5
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 4.2e-62 241.5 151 77.5
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.5e-62 241.1 153 77.1
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 9.4e-62 240.4 153 73.9
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.6e-61 238.4 153 76.5
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.0e-60 236.9 149 75.8
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.8e-60 236.1 151 75.5
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 72.5
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.8e-60 236.1 153 73.9
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 6.7e-60 234.2 150 73.3
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 1.5e-59 233.0 153 71.2
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 2.6e-59 232.3 153 70.6
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 7.5e-59 230.7 150 70.7
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.7e-58 229.6 153 69.9
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 2.2e-58 229.2 153 69.3
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 6.3e-58 227.6 153 69.3
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 6.3e-58 227.6 153 69.3
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 8.2e-58 227.3 150 70.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.1e-57 226.9 150 70.0
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.1e-57 226.9 150 69.3
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.4e-57 226.5 153 69.9
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 3.1e-57 225.3 152 67.8
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 4.1e-57 224.9 148 70.9
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 5.3e-57 224.6 151 68.2
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 7.0e-57 224.2 150 70.0
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 9.1e-57 223.8 150 68.7
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 5.9e-56 221.1 153 67.3
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 5.9e-56 221.1 153 69.3
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 7.7e-56 220.7 151 67.5
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.3e-55 219.9 150 72.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.7e-55 219.5 155 69.0
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.2e-55 219.2 151 68.9
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.0e-55 218.0 155 67.7
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.2e-54 214.9 143 73.4
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 2.7e-53 212.2 168 61.3
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 9.8e-51 203.8 153 64.7
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.7e-50 203.0 120 81.7
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 3.1e-49 198.7 122 77.0
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 5.4e-49 198.0 153 64.7
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 5.4e-49 198.0 153 58.8
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 7.0e-49 197.6 145 59.3
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 7.0e-49 197.6 119 78.2
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 4.7e-45 184.9 128 67.2
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.6e-43 179.1 111 72.1
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 9.8e-43 177.2 111 72.1
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.7e-42 176.4 153 52.9
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.3e-39 166.8 181 53.0
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.5e-38 162.5 95 82.1
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.8e-33 146.4 149 46.3
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-33 146.0 100 73.0
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 2.0e-32 142.9 121 61.2
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.7e-31 139.8 78 85.9
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 8.6e-31 137.5 75 82.7
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.4e-28 130.2 144 45.8
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 4.4e-27 125.2 75 80.0
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.7e-26 123.2 75 72.0
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 8.3e-26 120.9 75 76.0
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 3.2e-25 119.0 80 75.0
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 7.0e-25 117.9 67 80.6
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.6e-24 116.7 89 67.4
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 2.0e-24 116.3 78 76.9
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 7.8e-24 114.4 65 80.0
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 6.8e-20 101.3 149 36.9
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.6e-13 80.1 59 69.5
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.0e-07 60.8 68 50.0


User provided reference genes

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