Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024079 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D021497 1.1e-30 136.0 65 100.0
CSS0006758 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D021497 5.3e-30 133.7 65 98.5
CSS0022514 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 1.7e-12 75.5 38 94.7
CSS0048599 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 1.7e-12 75.5 38 94.7
DCAR_030033 Daucus carota HOM05D000073 ORTHO05D000033 8.4e-12 73.2 38 89.5
MBI16_g32896_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 8.4e-12 73.2 38 92.1
Rhsim12G0135400 Rhododendron simsii HOM05D000073 ORTHO05D000033 2.5e-11 71.6 38 89.5
Dinv16719 Davidia involucrata HOM05D000073 ORTHO05D000033 3.2e-11 71.2 38 89.5
TAR374G0717 Trochodendron aralioides HOM05D000073 ORTHO05D000033 3.2e-11 71.2 38 89.5
MBI16_g42897_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 4.2e-11 70.9 50 74.0
Migut.L01203 Erythranthe guttata HOM05D000073 ORTHO05D000033 9.3e-11 69.7 38 84.2
Hma1.2p1_0357F.1_g134550 Hydrangea macrophylla HOM05D000073 ORTHO05D000033 9.3e-11 69.7 38 84.2
TWI31G0349 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 9.3e-11 69.7 38 84.2
TWI79G1593 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 9.3e-11 69.7 38 84.2
Dinv34083 Davidia involucrata HOM05D000073 ORTHO05D000033 2.1e-10 68.6 38 84.2
Nn3g17416 Nelumbo nucifera HOM05D000073 ORTHO05D000033 2.1e-10 68.6 38 84.2
Lj6C781G0 Lonicera japonica HOM05D000073 ORTHO05D000033 2.7e-10 68.2 38 84.2
Os03g0212800 Oryza sativa ssp. japonica HOM05D000073 ORTHO05D000033 2.7e-10 68.2 38 84.2
CSS0001172 Camellia sinensis var. sinensis HOM05D000073 ORTHO05D000033 4.6e-10 67.4 38 81.6
DCAR_023805 Daucus carota HOM05D000073 ORTHO05D000033 6.1e-10 67.0 38 78.9
Nn4g23390 Nelumbo nucifera HOM05D000073 ORTHO05D000033 6.1e-10 67.0 38 81.6
GSVIVG01012191001 Vitis vinifera HOM05D000073 ORTHO05D000033 7.9e-10 66.6 38 81.6
Zm00001eb400300 Zea mays HOM05D000073 ORTHO05D000033 7.9e-10 66.6 38 78.9
MSTRG.744 Avicennia marina HOM05D000073 ORTHO05D000033 1.3e-09 65.9 38 78.9
SGA_v2.0_scaffold36G14445 Striga asiatica HOM05D000073 ORTHO05D000033 1.3e-09 65.9 38 81.6
Actinidia28641 Actinidia chinensis HOM05D000073 ORTHO05D000033 1.8e-09 65.5 38 78.9
Peaxi162Scf00314g00234 Petunia axillaris HOM05D000073 ORTHO05D000033 1.8e-09 65.5 38 81.6
Thecc.02G333500 Theobroma cacao HOM05D000073 ORTHO05D000033 1.8e-09 65.5 38 81.6
Lj3A1031G29 Lonicera japonica HOM05D000073 ORTHO05D000033 3.0e-09 64.7 38 78.9
CiPaw.06G091500 Carya illinoinensis HOM05D000073 ORTHO05D000033 3.9e-09 64.3 38 78.9
FvH4_4g30310 Fragaria vesca HOM05D000073 ORTHO05D000033 3.9e-09 64.3 38 78.9
FAN07G2265 Fragaria x ananassa HOM05D000073 ORTHO05D000033 3.9e-09 64.3 38 78.9
FAN17G0517 Fragaria x ananassa HOM05D000073 ORTHO05D000033 3.9e-09 64.3 38 78.9
FAN27G1885 Fragaria x ananassa HOM05D000073 ORTHO05D000033 3.9e-09 64.3 38 78.9
Medtr5g044000 Medicago truncatula HOM05D000073 ORTHO05D000033 3.9e-09 64.3 38 81.6
Rhsim12G0135100 Rhododendron simsii HOM05D000073 ORTHO05D000033 3.9e-09 64.3 38 78.9
Sabra08G0070700 Salix brachista HOM05D000073 ORTHO05D000033 3.9e-09 64.3 38 81.6
Nn3g17417 Nelumbo nucifera HOM05D000073 ORTHO05D000033 5.1e-09 63.9 60 55.0
Lsat_1_v5_gn_8_47601 Lactuca sativa HOM05D000073 ORTHO05D000033 6.7e-09 63.5 38 71.1
Oeu029103.1 Olea europaea HOM05D000073 ORTHO05D000033 6.7e-09 63.5 35 82.9
Phvul.003G043600 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 6.7e-09 63.5 38 81.6
PGR119G0663 Punica granatum HOM05D000073 ORTHO05D000033 6.7e-09 63.5 38 76.3
Aqoxy3G03597 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 8.7e-09 63.2 38 76.3
Ciclev10031299m.g Citrus clementina HOM05D000073 ORTHO05D000033 8.7e-09 63.2 38 76.3
Hma1.2p1_0354F.1_g133510 Hydrangea macrophylla HOM05D000073 ORTHO05D000033 8.7e-09 63.2 38 78.9
VMungo1215G0562 Vigna mungo HOM05D000073 ORTHO05D000033 8.7e-09 63.2 38 81.6
GSVIVG01012192001 Vitis vinifera HOM05D000073 ORTHO05D000033 8.7e-09 63.2 38 76.3
Duzib251G0680 Durio zibethinus HOM05D000073 ORTHO05D000033 1.1e-08 62.8 38 73.7
FAN22G0802 Fragaria x ananassa HOM05D000073 ORTHO05D021497 1.1e-08 62.8 39 74.4
MD13G1064200 Malus domestica HOM05D000073 ORTHO05D000033 1.1e-08 62.8 38 76.3
MD13G1064300 Malus domestica HOM05D000073 ORTHO05D000033 1.1e-08 62.8 38 76.3
PSO782G4147 Papaver somniferum HOM05D000073 ORTHO05D000033 1.1e-08 62.8 38 78.9
RcHm_v2.0_Chr4g0438611 Rosa chinensis HOM05D000073 ORTHO05D000033 1.1e-08 62.8 38 76.3
MSTRG.2315 Avicennia marina HOM05D000073 ORTHO05D000033 1.5e-08 62.4 38 76.3
Glyma.01G057200 Glycine max HOM05D000073 ORTHO05D000033 1.5e-08 62.4 38 78.9
Potri.008G094200 Populus trichocarpa HOM05D000073 ORTHO05D000033 1.5e-08 62.4 38 78.9
Rhsim12G0135300 Rhododendron simsii HOM05D000073 ORTHO05D000033 1.5e-08 62.4 38 78.9
vmacro21562 Vaccinium macrocarpon HOM05D000073 ORTHO05D000033 1.5e-08 62.4 38 76.3
Actinidia32296 Actinidia chinensis HOM05D000073 ORTHO05D000033 1.9e-08 62.0 39 74.4
Eucgr.G02458 Eucalyptus grandis HOM05D000073 ORTHO05D000033 1.9e-08 62.0 38 76.3
Manes.01G028900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.9e-08 62.0 38 84.2
vmacro16377 Vaccinium macrocarpon HOM05D000073 ORTHO05D000033 1.9e-08 62.0 38 73.7
Cc11_g12170 Coffea canephora HOM05D000073 ORTHO05D000033 2.5e-08 61.6 38 71.1
Lj4g0024969 Lotus japonicus HOM05D000073 ORTHO05D000033 3.3e-08 61.2 35 82.9
Phvul.002G102800 Phaseolus vulgaris HOM05D000073 ORTHO05D000033 3.3e-08 61.2 35 82.9
Psat0s2312g0040 Pisum sativum HOM05D000073 ORTHO05D000033 3.3e-08 61.2 38 76.3
QL03p071290 Quercus lobata HOM05D000073 ORTHO05D000033 3.3e-08 61.2 38 76.3
TPR.G24423 Trifolium pratense HOM05D000073 ORTHO05D000033 3.3e-08 61.2 35 82.9
ATR0064G104 Amborella trichopoda HOM05D000073 ORTHO05D000033 4.3e-08 60.8 35 82.9
Ca_04935_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 4.3e-08 60.8 38 73.7
MELO3C011430.2 Cucumis melo HOM05D000073 ORTHO05D000033 4.3e-08 60.8 38 73.7
CsaV3_6G032510 Cucumis sativus L. HOM05D000073 ORTHO05D000033 4.3e-08 60.8 38 73.7
CsaV3_6G033580 Cucumis sativus L. HOM05D000073 ORTHO05D000033 4.3e-08 60.8 38 73.7
Gohir.D13G081100 Gossypium hirsutum HOM05D000073 ORTHO05D000033 4.3e-08 60.8 38 76.3
Gorai.013G093100 Gossypium raimondii HOM05D000073 ORTHO05D000033 4.3e-08 60.8 38 76.3
HanXRQChr12g0363001 Helianthus annuus HOM05D000073 ORTHO05D000033 4.3e-08 60.8 38 71.1
PGSC0003DMG400001209 Solanum tuberosum HOM05D000073 ORTHO05D000033 4.3e-08 60.8 38 76.3
PSO063G6678 Papaver somniferum HOM05D000073 ORTHO05D000033 5.7e-08 60.5 38 76.3
Prupe.1G284600 Prunus persica HOM05D000073 ORTHO05D000033 5.7e-08 60.5 38 73.7
MSTRG.7752 Avicennia marina HOM05D000073 ORTHO05D000033 7.4e-08 60.1 38 71.1
CDE10G0190 Ceratophyllum demersum HOM05D000073 ORTHO05D000033 7.4e-08 60.1 38 73.7
QL03p071269 Quercus lobata HOM05D000073 ORTHO05D000033 7.4e-08 60.1 38 71.1
HPP92_024914 Vanilla planifolia HOM05D000073 ORTHO05D000033 7.4e-08 60.1 38 73.7
Cpa.g.sc1.110 Carica papaya HOM05D000073 ORTHO05D000033 9.7e-08 59.7 38 71.1
PGR119G1047 Punica granatum HOM05D000073 ORTHO05D000033 9.7e-08 59.7 38 73.7
Sed0014377 Sechium edule HOM05D000073 ORTHO05D000033 9.7e-08 59.7 38 71.1
Sed0023144 Sechium edule HOM05D000073 ORTHO05D000033 9.7e-08 59.7 38 71.1
arahy.Tifrunner.gnm1.ann1.S8ZBKA Arachis hypogaea HOM05D000073 ORTHO05D000033 1.3e-07 59.3 35 80.0
arahy.Tifrunner.gnm1.ann1.ZLL7AW Arachis hypogaea HOM05D000073 ORTHO05D000033 1.3e-07 59.3 35 80.0
Lalb_Chr16g0385541 Lupinus albus HOM05D000073 ORTHO05D000033 1.3e-07 59.3 35 80.0
Nitab4.5_0008450g0030 Nicotiana tabacum HOM05D000073 ORTHO05D000033 1.3e-07 59.3 38 76.3
Potri.010G159900 Populus trichocarpa HOM05D000073 ORTHO05D000033 1.3e-07 59.3 38 73.7
Cpa.g.sc1.109 Carica papaya HOM05D000073 ORTHO05D000033 1.6e-07 58.9 38 71.1
COL.COLO4_27907 Corchorus olitorius HOM05D000073 ORTHO05D000033 1.6e-07 58.9 38 73.7
Migut.L01202 Erythranthe guttata HOM05D000073 ORTHO05D000033 1.6e-07 58.9 38 71.1
Lalb_Chr16g0385561 Lupinus albus HOM05D000073 ORTHO05D000033 1.6e-07 58.9 35 80.0
MD16G1062800 Malus domestica HOM05D000073 ORTHO05D000033 1.6e-07 58.9 38 71.1
Peaxi162Scf00026g00209 Petunia axillaris HOM05D000073 ORTHO05D000033 1.6e-07 58.9 38 73.7
vmacro16376 Vaccinium macrocarpon HOM05D000073 ORTHO05D000033 1.6e-07 58.9 38 76.3
Zm00001eb008530 Zea mays HOM05D000073 ORTHO05D000033 1.6e-07 58.9 38 68.4
Lalb_Chr16g0385571 Lupinus albus HOM05D000073 ORTHO05D000033 2.2e-07 58.5 35 80.0
Nitab4.5_0002052g0080 Nicotiana tabacum HOM05D000073 ORTHO05D000033 2.2e-07 58.5 38 73.7
Os10g0323500 Oryza sativa ssp. japonica HOM05D000073 ORTHO05D000033 2.2e-07 58.5 38 68.4
vmacro16378 Vaccinium macrocarpon HOM05D000073 ORTHO05D000033 2.2e-07 58.5 38 73.7
HPP92_023629 Vanilla planifolia HOM05D000073 ORTHO05D000033 2.2e-07 58.5 38 71.1
VMungo0251G3539 Vigna mungo HOM05D000073 ORTHO05D000033 2.2e-07 58.5 35 80.0
arahy.Tifrunner.gnm1.ann1.P0AA9G Arachis hypogaea HOM05D000073 ORTHO05D021497 2.8e-07 58.2 35 77.1
CiPaw.05G126400 Carya illinoinensis HOM05D000073 ORTHO05D000033 2.8e-07 58.2 38 71.1
Thecc.02G333300 Theobroma cacao HOM05D000073 ORTHO05D000033 2.8e-07 58.2 35 74.3
CANSAT64G2948 Cannabis sativa HOM05D000073 ORTHO05D000033 3.7e-07 57.8 38 71.1
Gohir.D13G081000 Gossypium hirsutum HOM05D000073 ORTHO05D000033 3.7e-07 57.8 38 73.7
Gorai.013G093000 Gossypium raimondii HOM05D000073 ORTHO05D000033 3.7e-07 57.8 38 73.7
HanXRQChr08g0211861 Helianthus annuus HOM05D000073 ORTHO05D000033 3.7e-07 57.8 38 71.1
Nitab4.5_0002082g0010 Nicotiana tabacum HOM05D000073 ORTHO05D000033 3.7e-07 57.8 38 71.1
CAN.G59.12 Capsicum annuum HOM05D000073 ORTHO05D000033 4.8e-07 57.4 38 71.1
Haze_11922 Corylus avellana HOM05D000073 ORTHO05D000033 4.8e-07 57.4 38 71.1
Sabra10G0121600 Salix brachista HOM05D000073 ORTHO05D000033 4.8e-07 57.4 38 73.7
Solyc01g010160.3 Solanum lycopersicum HOM05D000073 ORTHO05D000033 6.3e-07 57.0 39 69.2
Duzib251G0881 Durio zibethinus HOM05D000073 ORTHO05D000033 8.2e-07 56.6 38 68.4
COL.COLO4_27906 Corchorus olitorius HOM05D000073 ORTHO05D000033 1.1e-06 56.2 38 71.1
Gohir.A13G081300 Gossypium hirsutum HOM05D000073 ORTHO05D000033 1.1e-06 56.2 38 71.1
Nitab4.5_0002362g0070 Nicotiana tabacum HOM05D000073 ORTHO05D021497 1.1e-06 56.2 35 74.3
Gohir.A13G081400 Gossypium hirsutum HOM05D000073 ORTHO05D000033 1.4e-06 55.8 35 74.3
Gohir.A13G142600 Gossypium hirsutum HOM05D000073 ORTHO05D000033 1.4e-06 55.8 38 71.1
Gohir.D13G147300 Gossypium hirsutum HOM05D000073 ORTHO05D000033 1.4e-06 55.8 38 71.1
Lj3g0009309 Lotus japonicus HOM05D000073 ORTHO05D000033 1.4e-06 55.8 35 77.1
FvH4_3g21512 Fragaria vesca HOM05D000073 ORTHO05D000033 1.8e-06 55.5 38 65.8
FAN11G1546 Fragaria x ananassa HOM05D000073 ORTHO05D004110 1.8e-06 55.5 38 65.8
FAN21G1038 Fragaria x ananassa HOM05D000073 ORTHO05D000033 1.8e-06 55.5 38 65.8
FAN25G2942 Fragaria x ananassa HOM05D000073 ORTHO05D004110 1.8e-06 55.5 38 65.8
unitig_699.g19505 Utricularia gibba HOM05D000073 ORTHO05D000033 1.8e-06 55.5 38 63.2
CANSAT64G2770 Cannabis sativa HOM05D000073 ORTHO05D000033 2.4e-06 55.1 38 68.4
unitig_26.g10290 Utricularia gibba HOM05D000073 ORTHO05D000033 2.4e-06 55.1 38 65.8
Aqoxy4G01895 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 3.1e-06 54.7 38 65.8
Carub.0001s2448 Capsella rubella HOM05D000073 ORTHO05D000033 3.1e-06 54.7 38 71.1
COL.COLO4_32210 Corchorus olitorius HOM05D000073 ORTHO05D000033 3.1e-06 54.7 40 67.5
SalBow2G0554 Salvia bowleyana HOM05D000073 ORTHO05D000033 3.1e-06 54.7 35 71.4
SalBow2G3335 Salvia bowleyana HOM05D000073 ORTHO05D000033 3.1e-06 54.7 35 71.4
Sopen01g006000 Solanum pennellii HOM05D000073 ORTHO05D000033 3.1e-06 54.7 38 68.4
Glyma.20G026300 Glycine max HOM05D000073 ORTHO05D000033 4.1e-06 54.3 35 77.1
MBI18_g30444_MAGBIO Magnolia biondii HOM05D000073 ORTHO05D000033 4.1e-06 54.3 38 65.8
Aa31LG7G8530 Aethionema arabicum HOM05D000073 ORTHO05D000033 5.3e-06 53.9 38 65.8
ClCG08G010290 Citrullus lanatus HOM05D000073 ORTHO05D000033 5.3e-06 53.9 38 63.2
Duzib213G0735 Durio zibethinus HOM05D000073 ORTHO05D000033 5.3e-06 53.9 35 71.4
Thecc.07G059300 Theobroma cacao HOM05D000073 ORTHO05D000033 5.3e-06 53.9 38 63.2
TWI38G0678 Tripterygium wilfordii HOM05D000073 ORTHO05D000033 6.9e-06 53.5 38 63.2
arahy.Tifrunner.gnm1.ann1.9HVA90 Arachis hypogaea HOM05D000073 ORTHO05D021497 9.0e-06 53.1 35 71.4
RcHm_v2.0_Chr5g0036981 Rosa chinensis HOM05D000073 ORTHO05D000033 9.0e-06 53.1 38 63.2


User provided reference genes

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