Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 4.9e-75 284.3 131 100.0
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 3.7e-51 204.9 99 98.0
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 2.3e-48 195.7 99 92.9
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 8.6e-48 193.7 99 89.9
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 1.1e-47 193.4 99 91.9
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 1.1e-47 193.4 99 90.9
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 1.5e-47 193.0 99 89.9
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 1.9e-47 192.6 99 90.9
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.9e-47 192.6 99 90.9
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 2.5e-47 192.2 99 90.9
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 2.5e-47 192.2 99 87.9
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 3.3e-47 191.8 99 88.9
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 3.3e-47 191.8 99 88.9
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 4.3e-47 191.4 99 87.9
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 4.3e-47 191.4 99 87.9
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 4.3e-47 191.4 99 87.9
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 4.3e-47 191.4 99 87.9
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 5.6e-47 191.0 99 88.9
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 5.6e-47 191.0 99 88.9
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 5.6e-47 191.0 99 88.9
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 5.6e-47 191.0 99 89.9
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 5.6e-47 191.0 99 89.9
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 87.9
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 87.9
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 88.9
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 7.3e-47 190.7 99 89.9
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 87.9
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 87.9
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 87.9
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 87.9
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 89.9
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 89.9
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 89.9
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 90.9
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 90.9
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 9.6e-47 190.3 99 90.9
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.2e-46 189.9 98 91.8
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 1.2e-46 189.9 99 88.9
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 1.2e-46 189.9 99 88.9
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 1.6e-46 189.5 99 89.9
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 2.1e-46 189.1 99 88.9
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 2.1e-46 189.1 99 87.9
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 2.1e-46 189.1 99 88.9
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 2.8e-46 188.7 114 79.8
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 3.6e-46 188.3 99 86.9
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 3.6e-46 188.3 99 89.9
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 3.6e-46 188.3 99 88.9
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 4.7e-46 188.0 99 87.9
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 4.7e-46 188.0 99 88.9
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 6.2e-46 187.6 99 85.9
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 1.1e-45 186.8 99 84.8
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 1.4e-45 186.4 99 87.9
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 1.4e-45 186.4 99 85.9
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 1.4e-45 186.4 99 85.9
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 1.4e-45 186.4 99 86.9
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 1.4e-45 186.4 99 86.9
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 1.8e-45 186.0 99 85.9
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 1.8e-45 186.0 99 85.9
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 1.8e-45 186.0 99 85.9
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 1.8e-45 186.0 99 86.9
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 1.8e-45 186.0 99 85.9
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 1.8e-45 186.0 99 88.9
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 2.4e-45 185.7 99 87.9
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 2.4e-45 185.7 99 86.9
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.1e-45 185.3 99 84.8
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.0e-45 184.9 99 86.9
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 1.5e-44 183.0 99 85.9
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 3.4e-44 181.8 99 87.9
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 3.4e-44 181.8 107 83.2
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 4.4e-44 181.4 99 82.8
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 4.4e-44 181.4 99 82.8
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 5.8e-44 181.0 99 83.8
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 7.6e-44 180.6 99 82.8
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 9.9e-44 180.3 99 82.8
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 1.3e-43 179.9 99 81.8
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 1.7e-43 179.5 101 83.2
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 2.2e-43 179.1 99 80.8
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 2.9e-43 178.7 99 81.8
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 2.9e-43 178.7 99 81.8
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 2.9e-43 178.7 99 81.8
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 2.9e-43 178.7 99 81.8
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 2.9e-43 178.7 99 81.8
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 2.9e-43 178.7 99 81.8
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.8e-43 178.3 99 81.8
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 8.4e-43 177.2 99 81.8
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 1.1e-42 176.8 99 80.8
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 1.1e-42 176.8 99 80.8
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 3.2e-42 175.3 99 80.8
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 1.2e-41 173.3 99 80.8
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 2.1e-41 172.6 99 76.8
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 3.5e-41 171.8 99 77.8
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 7.8e-41 170.6 119 67.2
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.7e-40 169.5 99 77.8
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 1.7e-40 169.5 99 73.7
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 3.9e-40 168.3 99 73.7
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 5.1e-40 167.9 99 76.8
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 1.9e-39 166.0 99 75.8
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 7.9e-33 144.1 75 88.0
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.7e-32 142.9 88 78.4
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 3.7e-14 82.0 91 37.4
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 2.2e-11 72.8 54 61.1
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 5.0e-11 71.6 94 37.2
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 9.7e-07 57.4 38 71.1
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 4.8e-06 55.1 35 65.7


User provided reference genes

Program Settings