Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024056 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D110517 6.7e-117 424.1 224 100.0
CSS0003960 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 6.2e-78 294.7 294 64.3
CSS0001048 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 6.1e-17 92.0 82 63.4
CSS0030508 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 7.9e-09 65.1 80 50.0
CSS0044783 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 7.9e-09 65.1 80 50.0
Sed0008264 Sechium edule HOM05D001842 ORTHO05D001849 7.9e-09 65.1 68 52.9
Actinidia22891 Actinidia chinensis HOM05D001842 ORTHO05D001849 2.3e-08 63.5 38 78.9
Manes.01G155900 Manihot esculenta HOM05D001842 ORTHO05D001849 3.0e-08 63.2 38 76.3
HanXRQChr14g0442891 Helianthus annuus HOM05D001842 ORTHO05D001849 5.1e-08 62.4 51 62.7
Sc05g0006840 Simmondsia chinensis HOM05D001842 ORTHO05D001849 5.1e-08 62.4 51 56.9
vmacro20625 Vaccinium macrocarpon HOM05D001842 ORTHO05D001849 5.1e-08 62.4 38 73.7
ECA238G3849 Erigeron canadensis HOM05D001842 ORTHO05D001849 6.7e-08 62.0 51 62.7
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 8.8e-08 61.6 51 58.8
Atru.chr3.124 Acer truncatum HOM05D001842 ORTHO05D001849 1.1e-07 61.2 51 58.8
CSS0024804 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.1e-07 61.2 38 73.7
CSS0030981 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.1e-07 61.2 38 73.7
CiPaw.06G115800 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.1e-07 61.2 38 71.1
Haze_02003 Corylus avellana HOM05D001842 ORTHO05D001849 1.1e-07 61.2 38 73.7
MD05G1135500 Malus domestica HOM05D001842 ORTHO05D001849 1.1e-07 61.2 56 60.7
PSO675G7298 Papaver somniferum HOM05D001842 ORTHO05D001849 1.1e-07 61.2 51 56.9
Cpa.g.sc6.364 Carica papaya HOM05D001842 ORTHO05D001849 2.0e-07 60.5 38 73.7
FAN27G0714 Fragaria x ananassa HOM05D001842 ORTHO05D001849 2.0e-07 60.5 38 73.7
Nitab4.5_0001467g0060 Nicotiana tabacum HOM05D001842 ORTHO05D001849 2.0e-07 60.5 38 73.7
Nitab4.5_0007782g0070 Nicotiana tabacum HOM05D001842 ORTHO05D001849 2.0e-07 60.5 38 73.7
Rhsim10G0194400 Rhododendron simsii HOM05D001842 ORTHO05D001849 2.0e-07 60.5 57 54.4
TWI09G0475 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 2.0e-07 60.5 38 73.7
Aqoxy6G01606 Aquilegia oxysepala HOM05D001842 ORTHO05D001849 2.6e-07 60.1 38 71.1
FvH4_2g16750 Fragaria vesca HOM05D001842 ORTHO05D001849 2.6e-07 60.1 38 73.7
FAN24G0597 Fragaria x ananassa HOM05D001842 ORTHO05D001849 2.6e-07 60.1 38 73.7
HanXRQChr09g0259431 Helianthus annuus HOM05D001842 ORTHO05D001849 2.6e-07 60.1 41 70.7
Dinv28318 Davidia involucrata HOM05D001842 ORTHO05D001849 3.3e-07 59.7 38 71.1
Gohir.A07G171600 Gossypium hirsutum HOM05D001842 ORTHO05D001849 3.3e-07 59.7 38 71.1
Gohir.D07G178300 Gossypium hirsutum HOM05D001842 ORTHO05D001849 3.3e-07 59.7 38 71.1
Gorai.001G199400 Gossypium raimondii HOM05D001842 ORTHO05D001849 3.3e-07 59.7 38 71.1
Lsat_1_v5_gn_2_73740 Lactuca sativa HOM05D001842 ORTHO05D001849 3.3e-07 59.7 51 60.8
Lsat_1_v5_gn_8_112480 Lactuca sativa HOM05D001842 ORTHO05D001849 3.3e-07 59.7 51 60.8
Prupe.8G179600 Prunus persica HOM05D001842 ORTHO05D001849 3.3e-07 59.7 38 73.7
QL11p056280 Quercus lobata HOM05D001842 ORTHO05D001849 3.3e-07 59.7 38 71.1
Hund06365 Selenicereus undatus HOM05D001842 ORTHO05D001849 3.3e-07 59.7 57 56.1
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 3.3e-07 59.7 38 73.7
CiPaw.05G092800 Carya illinoinensis HOM05D001842 ORTHO05D001849 4.4e-07 59.3 38 71.1
Sed0023090 Sechium edule HOM05D001842 ORTHO05D001849 4.4e-07 59.3 68 51.5
AT1G21630 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 7.4e-07 58.5 38 68.4
Cfa005365 Carpinus fangiana HOM05D001842 ORTHO05D001849 7.4e-07 58.5 38 65.8
AUR62013173 Chenopodium quinoa HOM05D001842 ORTHO05D001849 7.4e-07 58.5 57 52.6
AUR62010172 Chenopodium quinoa HOM05D001842 ORTHO05D001849 9.7e-07 58.2 57 52.6
Dinv40195 Davidia involucrata HOM05D001842 ORTHO05D001849 9.7e-07 58.2 38 71.1
MBI05_g33293_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 9.7e-07 58.2 38 71.1
TWI53G0649 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 9.7e-07 58.2 38 68.4
C08p20960 Brassica napus HOM05D001842 ORTHO05D001849 1.3e-06 57.8 38 65.8
MELO3C013251.2 Cucumis melo HOM05D001842 ORTHO05D001849 1.3e-06 57.8 58 50.0
PGR042G2901 Punica granatum HOM05D001842 ORTHO05D001849 1.3e-06 57.8 48 62.5
BcaB07g32156 Brassica carinata HOM05D001842 ORTHO05D001849 1.7e-06 57.4 38 68.4
A06p17700 Brassica napus HOM05D001842 ORTHO05D001849 1.7e-06 57.4 38 68.4
BraA06t24862Z Brassica rapa HOM05D001842 ORTHO05D001849 1.7e-06 57.4 38 68.4
Ciclev10024733m.g Citrus clementina HOM05D001842 ORTHO05D001849 1.7e-06 57.4 38 71.1
Nn5g30998 Nelumbo nucifera HOM05D001842 ORTHO05D001849 1.7e-06 57.4 38 71.1
TAR628G0545 Trochodendron aralioides HOM05D001842 ORTHO05D001849 1.7e-06 57.4 38 71.1
AL1G34770 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 2.2e-06 57.0 38 65.8
CAN.G1238.17 Capsicum annuum HOM05D001842 ORTHO05D001849 2.2e-06 57.0 38 71.1
ClCG02G003430 Citrullus lanatus HOM05D001842 ORTHO05D001849 2.2e-06 57.0 58 48.3
CsaV3_7G001880 Cucumis sativus L. HOM05D001842 ORTHO05D001849 2.2e-06 57.0 58 48.3
MD10G1140800 Malus domestica HOM05D001842 ORTHO05D001849 2.2e-06 57.0 38 71.1
Nn6g31683 Nelumbo nucifera HOM05D001842 ORTHO05D001849 2.2e-06 57.0 38 68.4
Solyc02g082540.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 2.2e-06 57.0 38 71.1
Sopen02g027220 Solanum pennellii HOM05D001842 ORTHO05D001849 2.2e-06 57.0 38 71.1
BolC8t49733H Brassica oleracea HOM05D001842 ORTHO05D001849 2.8e-06 56.6 38 65.8
COL.COLO4_22557 Corchorus olitorius HOM05D001842 ORTHO05D001849 2.8e-06 56.6 38 68.4
Eucgr.G01875 Eucalyptus grandis HOM05D001842 ORTHO05D001849 2.8e-06 56.6 38 68.4
Oeu012542.1 Olea europaea HOM05D001842 ORTHO05D001849 2.8e-06 56.6 38 68.4
Peaxi162Scf00580g00016 Petunia axillaris HOM05D001842 ORTHO05D001849 2.8e-06 56.6 38 65.8
Potri.005G102200 Populus trichocarpa HOM05D001842 ORTHO05D001849 2.8e-06 56.6 38 71.1
Hma1.2p1_0085F.1_g044600 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 3.7e-06 56.2 38 71.1
Lj2C501G4 Lonicera japonica HOM05D001842 ORTHO05D001849 3.7e-06 56.2 38 71.1
Sabra05G0084600 Salix brachista HOM05D001842 ORTHO05D001849 3.7e-06 56.2 38 71.1
CSS0039865 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D024698 4.8e-06 55.8 57 52.6
Thecc.01G004600 Theobroma cacao HOM05D001842 ORTHO05D001849 4.8e-06 55.8 38 71.1
Aa31LG7G5600 Aethionema arabicum HOM05D001842 ORTHO05D001849 6.3e-06 55.5 38 65.8
BcaC05g26080 Brassica carinata HOM05D001842 ORTHO05D001849 6.3e-06 55.5 38 65.8
Duzib264G1083 Durio zibethinus HOM05D001842 ORTHO05D001849 6.3e-06 55.5 38 68.4
Sp1g19150 Schrenkiella parvula HOM05D001842 ORTHO05D001849 6.3e-06 55.5 38 65.8
BcaB03g14261 Brassica carinata HOM05D001842 ORTHO05D001849 8.2e-06 55.1 38 65.8
Cc07_g11940 Coffea canephora HOM05D001842 ORTHO05D001849 8.2e-06 55.1 38 65.8
Thhalv10006584m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 8.2e-06 55.1 38 65.8
GSVIVG01023872001 Vitis vinifera HOM05D001842 ORTHO05D001849 8.2e-06 55.1 38 63.2


User provided reference genes

Program Settings