Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024034 Camellia sinensis var. sinensis HOM05D003797 ORTHO05D004370 1.1e-66 256.5 128 100.0
CSS0047498 Camellia sinensis var. sinensis HOM05D003797 ORTHO05D004370 1.6e-30 136.3 134 59.0
Dinv26370 Davidia involucrata HOM05D003797 ORTHO05D004370 1.1e-26 123.6 134 55.2
Dinv06119 Davidia involucrata HOM05D003797 ORTHO05D004370 4.5e-25 118.2 107 64.5
Rhsim09G0088200 Rhododendron simsii HOM05D003797 ORTHO05D004370 7.7e-25 117.5 132 54.5
CAN.G74.19 Capsicum annuum HOM05D003797 ORTHO05D004370 3.8e-24 115.2 96 69.8
Lj3A863T39 Lonicera japonica HOM05D003797 ORTHO05D004370 3.8e-24 115.2 88 72.7
Hma1.2p1_0234F.1_g098420 Hydrangea macrophylla HOM05D003797 ORTHO05D004370 5.0e-24 114.8 126 54.0
CANSAT78G0734 Cannabis sativa HOM05D003797 ORTHO05D004370 6.5e-24 114.4 126 52.4
Actinidia36612 Actinidia chinensis HOM05D003797 ORTHO05D004370 1.1e-23 113.6 129 51.9
ECA234G4680 Erigeron canadensis HOM05D003797 ORTHO05D004370 1.9e-23 112.8 96 67.7
Nitab4.5_0002414g0010 Nicotiana tabacum HOM05D003797 ORTHO05D004370 1.9e-23 112.8 96 68.8
Nitab4.5_0003619g0020 Nicotiana tabacum HOM05D003797 ORTHO05D004370 1.9e-23 112.8 96 68.8
TAR629G0971 Trochodendron aralioides HOM05D003797 ORTHO05D004370 1.9e-23 112.8 125 55.2
PGSC0003DMG400029467 Solanum tuberosum HOM05D003797 ORTHO05D004370 2.5e-23 112.5 96 68.8
Solyc04g008060.3 Solanum lycopersicum HOM05D003797 ORTHO05D004370 5.5e-23 111.3 96 67.7
Sopen04g003210 Solanum pennellii HOM05D003797 ORTHO05D004370 5.5e-23 111.3 96 67.7
SGA_v2.0_scaffold23G10159 Striga asiatica HOM05D003797 ORTHO05D004370 5.5e-23 111.3 99 62.6
DCAR_023568 Daucus carota HOM05D003797 ORTHO05D004370 9.4e-23 110.5 98 65.3
FAN07G0297 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.2e-22 110.2 96 65.6
FAN12G0353 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.2e-22 110.2 96 65.6
FAN17G2298 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.2e-22 110.2 96 65.6
FAN22G2109 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.2e-22 110.2 96 65.6
HanXRQChr16g0527241 Helianthus annuus HOM05D003797 ORTHO05D004370 1.6e-22 109.8 96 64.6
Lsat_1_v5_gn_4_23500 Lactuca sativa HOM05D003797 ORTHO05D004370 1.6e-22 109.8 96 64.6
VMungo0251G2898 Vigna mungo HOM05D003797 ORTHO05D004370 1.6e-22 109.8 134 50.7
COL.COLO4_27615 Corchorus olitorius HOM05D003797 ORTHO05D004370 2.7e-22 109.0 121 52.9
HanXRQChr17g0565981 Helianthus annuus HOM05D003797 ORTHO05D004370 2.7e-22 109.0 96 63.5
EL10Ac8g20121 Beta vulgaris HOM05D003797 ORTHO05D004370 3.6e-22 108.6 129 50.4
Cc11_g06660 Coffea canephora HOM05D003797 ORTHO05D004370 3.6e-22 108.6 80 73.8
Prupe.1G335200 Prunus persica HOM05D003797 ORTHO05D004370 3.6e-22 108.6 103 63.1
Manes.17G085600 Manihot esculenta HOM05D003797 ORTHO05D004370 4.7e-22 108.2 131 49.6
Potri.010G104200 Populus trichocarpa HOM05D003797 ORTHO05D004370 4.7e-22 108.2 124 50.0
Sp2g13230 Schrenkiella parvula HOM05D003797 ORTHO05D004370 4.7e-22 108.2 124 51.6
TPR.G19268 Trifolium pratense HOM05D003797 ORTHO05D004370 4.7e-22 108.2 129 48.8
Oeu043982.1 Olea europaea HOM05D003797 ORTHO05D004370 8.0e-22 107.5 70 82.9
RcHm_v2.0_Chr4g0442611 Rosa chinensis HOM05D003797 ORTHO05D004370 8.0e-22 107.5 92 67.4
AL5G10900 Arabidopsis lyrata HOM05D003797 ORTHO05D004370 1.0e-21 107.1 121 52.1
AT2G01770 Arabidopsis thaliana HOM05D003797 ORTHO05D004370 1.0e-21 107.1 124 50.8
arahy.Tifrunner.gnm1.ann1.2L3ISV Arachis hypogaea HOM05D003797 ORTHO05D004370 1.0e-21 107.1 129 48.1
arahy.Tifrunner.gnm1.ann1.Q36DTI Arachis hypogaea HOM05D000005 ORTHO05D004370 1.0e-21 107.1 129 48.1
Thhalv10005591m.g Eutrema salsugineum HOM05D003797 ORTHO05D004370 1.0e-21 107.1 121 52.1
LjContig00081g0026703 Lotus japonicus HOM05D003797 ORTHO05D004370 1.0e-21 107.1 121 51.2
Medtr8g105790 Medicago truncatula HOM05D003797 ORTHO05D004370 1.0e-21 107.1 133 49.6
GSVIVG01011629001 Vitis vinifera HOM05D003797 ORTHO05D004370 1.0e-21 107.1 78 74.4
Ah.14g087870 Amaranthus hybridus HOM05D003797 ORTHO05D004370 1.4e-21 106.7 83 71.1
Aqoxy3G04068 Aquilegia oxysepala HOM05D003797 ORTHO05D004370 1.4e-21 106.7 129 48.1
MSTRG.2118 Avicennia marina HOM05D003797 ORTHO05D004370 1.4e-21 106.7 80 71.2
Thecc.02G308100 Theobroma cacao HOM05D003797 ORTHO05D004370 1.4e-21 106.7 94 64.9
BcaC03g17074 Brassica carinata HOM05D003797 ORTHO05D004370 1.8e-21 106.3 121 51.2
A02p32320 Brassica napus HOM05D003797 ORTHO05D004370 1.8e-21 106.3 121 51.2
C02p49920 Brassica napus HOM05D003797 ORTHO05D004370 1.8e-21 106.3 121 51.2
BolC2t11071H Brassica oleracea HOM05D003797 ORTHO05D004370 1.8e-21 106.3 121 51.2
BraA02t08249Z Brassica rapa HOM05D003797 ORTHO05D004370 1.8e-21 106.3 121 51.2
Gohir.A13G027600 Gossypium hirsutum HOM05D003797 ORTHO05D004370 1.8e-21 106.3 105 62.9
Gohir.D13G026400 Gossypium hirsutum HOM05D003797 ORTHO05D004370 1.8e-21 106.3 105 61.9
Gorai.013G029700 Gossypium raimondii HOM05D003797 ORTHO05D004370 1.8e-21 106.3 105 61.9
Oeu006298.1 Olea europaea HOM05D003797 ORTHO05D004370 1.8e-21 106.3 77 75.3
Psat7g007520 Pisum sativum HOM05D003797 ORTHO05D004370 1.8e-21 106.3 135 48.1
Zm00001eb099150 Zea mays HOM05D003797 ORTHO05D004370 1.8e-21 106.3 79 68.4
Atru.chr11.846 Acer truncatum HOM05D003797 ORTHO05D004370 2.3e-21 105.9 123 52.0
Ah.09g234580 Amaranthus hybridus HOM05D003797 ORTHO05D004370 2.3e-21 105.9 75 76.0
BraA06t27283Z Brassica rapa HOM05D003797 ORTHO05D004370 2.3e-21 105.9 75 77.3
Cfa015046 Carpinus fangiana HOM05D003797 ORTHO05D004370 2.3e-21 105.9 96 65.6
ClCG01G006640 Citrullus lanatus HOM05D003797 ORTHO05D004370 2.3e-21 105.9 119 53.8
Glyma.08G047500 Glycine max HOM05D003797 ORTHO05D004370 2.3e-21 105.9 78 73.1
Zm00001eb312010 Zea mays HOM05D003797 ORTHO05D004370 2.3e-21 105.9 96 59.4
Cpa.g.sc2.168 Carica papaya HOM05D003797 ORTHO05D004370 3.0e-21 105.5 94 63.8
CiPaw.06G054700 Carya illinoinensis HOM05D003797 ORTHO05D004370 3.0e-21 105.5 87 67.8
AUR62012750 Chenopodium quinoa HOM05D003797 ORTHO05D004370 3.0e-21 105.5 88 65.9
AUR62021908 Chenopodium quinoa HOM05D003797 ORTHO05D004370 3.0e-21 105.5 88 65.9
Migut.E00497 Erythranthe guttata HOM05D003797 ORTHO05D004370 3.0e-21 105.5 80 68.8
MD16G1016600 Malus domestica HOM05D003797 ORTHO05D004370 3.0e-21 105.5 83 71.1
Potri.010G104100 Populus trichocarpa HOM05D003797 ORTHO05D004370 3.0e-21 105.5 131 49.6
QL03p037712 Quercus lobata HOM05D003797 ORTHO05D004370 3.0e-21 105.5 124 49.2
TWI74G1086 Tripterygium wilfordii HOM05D003797 ORTHO05D004370 3.0e-21 105.5 127 50.4
GSVIVG01011628001 Vitis vinifera HOM05D003797 ORTHO05D004370 3.0e-21 105.5 131 50.4
CARHR144350 Cardamine hirsuta HOM05D003797 ORTHO05D004370 4.0e-21 105.1 121 50.4
QL03p037918 Quercus lobata HOM05D003797 ORTHO05D004370 4.0e-21 105.1 132 50.0
SalBow2G0350 Salvia bowleyana HOM05D003797 ORTHO05D004370 4.0e-21 105.1 96 60.4
Ciclev10016475m.g Citrus clementina HOM05D003797 ORTHO05D004370 5.2e-21 104.8 78 70.5
CsaV3_5G014530 Cucumis sativus L. HOM05D003797 ORTHO05D004370 5.2e-21 104.8 121 50.4
MBI19_g09381_MAGBIO Magnolia biondii HOM05D003797 ORTHO05D004370 5.2e-21 104.8 134 49.3
Sabra10G0076600 Salix brachista HOM05D003797 ORTHO05D004370 5.2e-21 104.8 89 62.9
Atru.chr11.843 Acer truncatum HOM05D003797 ORTHO05D004370 6.7e-21 104.4 83 71.1
Atru.chr11.849 Acer truncatum HOM05D003797 ORTHO05D004370 6.7e-21 104.4 83 71.1
Carub.0005s0073 Capsella rubella HOM05D003797 ORTHO05D004370 6.7e-21 104.4 85 69.4
Duzib248G0263 Durio zibethinus HOM05D003797 ORTHO05D004370 6.7e-21 104.4 107 59.8
Os09g0396900 Oryza sativa ssp. japonica HOM05D003797 ORTHO05D004370 6.7e-21 104.4 96 59.4
Phvul.002G322800 Phaseolus vulgaris HOM05D003797 ORTHO05D004370 6.7e-21 104.4 136 45.6
HPP92_023443 Vanilla planifolia HOM05D003797 ORTHO05D004370 6.7e-21 104.4 89 65.2
Aa31LG2G8120 Aethionema arabicum HOM05D003797 ORTHO05D004370 8.8e-21 104.0 122 52.5
ClCG07G005420 Citrullus lanatus HOM05D003797 ORTHO05D004370 8.8e-21 104.0 90 63.3
Hund23441 Selenicereus undatus HOM05D003797 ORTHO05D004370 8.8e-21 104.0 127 47.2
BcaB07g30374 Brassica carinata HOM05D003797 ORTHO05D004370 1.1e-20 103.6 75 73.3
BcaC06g31278 Brassica carinata HOM05D003797 ORTHO05D004370 1.1e-20 103.6 87 66.7
Ca_17254_v3 Cicer arietinum L. HOM05D003797 ORTHO05D004370 1.1e-20 103.6 124 48.4
CsaV3_5G027940 Cucumis sativus L. HOM05D003797 ORTHO05D004370 1.1e-20 103.6 75 74.7
Glyma.05G240600 Glycine max HOM05D003797 ORTHO05D004370 1.1e-20 103.6 89 66.3
THA.LOC104823632 Tarenaya hassleriana HOM05D003797 ORTHO05D004370 1.1e-20 103.6 129 48.8
VMungo0251G0608 Vigna mungo HOM05D003797 ORTHO05D004370 1.1e-20 103.6 129 48.8
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.5e-20 103.2 121 48.8
MD13G1018700 Malus domestica HOM05D003797 ORTHO05D004370 1.5e-20 103.2 78 70.5
Duzib251G0134 Durio zibethinus HOM05D003797 ORTHO05D004370 2.0e-20 102.8 75 73.3
Phvul.002G322900 Phaseolus vulgaris HOM05D003797 ORTHO05D004370 2.0e-20 102.8 87 66.7
Eucgr.B02690 Eucalyptus grandis HOM05D003797 ORTHO05D004370 2.6e-20 102.4 87 66.7
Manes.15G136600 Manihot esculenta HOM05D003797 ORTHO05D004370 2.6e-20 102.4 75 72.0
PSO675G5697 Papaver somniferum HOM05D003797 ORTHO05D004370 2.6e-20 102.4 125 48.0
PSO732G0533 Papaver somniferum HOM05D003797 ORTHO05D004370 2.6e-20 102.4 125 48.0
PGR102G0637 Punica granatum HOM05D003797 ORTHO05D004370 3.3e-20 102.1 97 61.9
CDE05G1216 Ceratophyllum demersum HOM05D003797 ORTHO05D004370 4.4e-20 101.7 128 47.7
Duzib268G1244 Durio zibethinus HOM05D003797 ORTHO05D004370 4.4e-20 101.7 121 47.9
MELO3C005260.2 Cucumis melo HOM05D003797 ORTHO05D004370 5.7e-20 101.3 105 57.1
CsaV3_5G027930 Cucumis sativus L. HOM05D003797 ORTHO05D004370 5.7e-20 101.3 105 57.1
Dinv00922 Davidia involucrata HOM05D003797 ORTHO05D004370 5.7e-20 101.3 101 61.4
Dinv03968 Davidia involucrata HOM05D003797 ORTHO05D004370 5.7e-20 101.3 101 61.4
Lalb_Chr05g0222091 Lupinus albus HOM05D003797 ORTHO05D004370 5.7e-20 101.3 87 65.5
Phvul.002G323700 Phaseolus vulgaris HOM05D003797 ORTHO05D004370 5.7e-20 101.3 87 65.5
Eucgr.B02691 Eucalyptus grandis HOM05D003797 ORTHO05D004370 7.4e-20 100.9 142 45.8
Medtr8g105810 Medicago truncatula HOM05D003797 ORTHO05D004370 7.4e-20 100.9 87 64.4
Sed0007838 Sechium edule HOM05D003797 ORTHO05D004370 7.4e-20 100.9 75 72.0
Atru.chr11.837 Acer truncatum HOM05D003797 ORTHO05D004370 9.7e-20 100.5 118 50.8
CiPaw.06G054800 Carya illinoinensis HOM05D003797 ORTHO05D004370 9.7e-20 100.5 132 47.7
Nn3g18418 Nelumbo nucifera HOM05D003797 ORTHO05D004370 1.3e-19 100.1 78 74.4
HPP92_023452 Vanilla planifolia HOM05D003797 ORTHO05D004370 1.3e-19 100.1 69 76.8
SHI04334 Sapria himalayana HOM05D003797 ORTHO05D004370 2.2e-19 99.4 65 81.5
unitig_22.g5605 Utricularia gibba HOM05D003797 ORTHO05D004370 2.2e-19 99.4 91 60.4
Eucgr.G02084 Eucalyptus grandis HOM05D003797 ORTHO05D004370 3.7e-19 98.6 96 59.4
Nn3g18415 Nelumbo nucifera HOM05D003797 ORTHO05D004370 3.7e-19 98.6 86 64.0
Nn3g18417 Nelumbo nucifera HOM05D003797 ORTHO05D004370 1.1e-18 97.1 117 47.9
PSO732G0427 Papaver somniferum HOM05D003797 ORTHO05D004370 1.1e-18 97.1 86 62.8
PGR142G2609 Punica granatum HOM05D003797 ORTHO05D004370 1.1e-18 97.1 80 62.5
PSO675G2134 Papaver somniferum HOM05D003797 ORTHO05D004370 1.4e-18 96.7 86 62.8
SEGI_33821 Sequoiadendron giganteum HOM05D003797 ORTHO05D004370 1.4e-18 96.7 87 59.8
Ciclev10017583m.g Citrus clementina HOM05D003797 ORTHO05D004370 2.4e-18 95.9 114 51.8
Haze_10850 Corylus avellana HOM05D003797 ORTHO05D004370 2.4e-18 95.9 79 69.6
unitig_8.g4013 Utricularia gibba HOM05D003797 ORTHO05D004370 2.4e-18 95.9 91 58.2
CANSAT78G1947 Cannabis sativa HOM05D003797 ORTHO05D004370 3.1e-18 95.5 88 61.4
Sed0023787 Sechium edule HOM05D003797 ORTHO05D004370 4.1e-18 95.1 102 53.9
FvH4_4g33340 Fragaria vesca HOM05D003797 ORTHO05D004370 5.3e-18 94.7 88 60.2
MD16G1016500 Malus domestica HOM05D003797 ORTHO05D004370 5.3e-18 94.7 102 53.9
ATR0118G024 Amborella trichopoda HOM05D003797 ORTHO05D004370 7.0e-18 94.4 90 56.7
FAN07G2428 Fragaria x ananassa HOM05D003797 ORTHO05D004370 7.0e-18 94.4 87 62.1
Prupe.1G335300 Prunus persica HOM05D003797 ORTHO05D004370 9.1e-18 94.0 91 58.2
RcHm_v2.0_Chr4g0442571 Rosa chinensis HOM05D003797 ORTHO05D004370 9.1e-18 94.0 87 60.9
RcHm_v2.0_Chr4g0442581 Rosa chinensis HOM05D003797 ORTHO05D004370 9.1e-18 94.0 87 60.9
FAN12G2011 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.2e-17 93.6 87 60.9
unitig_27.g25168 Utricularia gibba HOM05D003797 ORTHO05D004370 1.2e-17 93.6 86 59.3
FAN17G0483 Fragaria x ananassa HOM05D003797 ORTHO05D004370 1.6e-17 93.2 87 60.9
FAN22G0305 Fragaria x ananassa HOM05D003797 ORTHO05D004370 2.6e-17 92.4 87 59.8
Pp3c2_34540 Physcomitrium patens HOM05D003797 ORTHO05D004370 3.5e-17 92.0 89 58.4
Os04g0463400 Oryza sativa ssp. japonica HOM05D003797 ORTHO05D004370 5.9e-17 91.3 71 63.4
Thecc.02G307900 Theobroma cacao HOM05D003797 ORTHO05D004370 1.0e-16 90.5 105 52.4
PSO384G3089 Papaver somniferum HOM05D003797 ORTHO05D004370 1.3e-16 90.1 104 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2367 Anthoceros agrestis HOM05D003797 ORTHO05D004370 1.7e-16 89.7 87 55.2
Mapoly0116s0023 Marchantia polymorpha HOM05D003797 ORTHO05D004370 2.9e-16 89.0 89 55.1
Duzib251G0065 Durio zibethinus HOM05D003797 ORTHO05D004370 2.5e-15 85.9 81 63.0
PSO339G4314 Papaver somniferum HOM05D003797 ORTHO05D004370 2.5e-15 85.9 104 48.1
CANSAT78G1255 Cannabis sativa HOM05D003797 ORTHO05D004370 2.1e-14 82.8 79 58.2
SMO169G0175 Selaginella moellendorffii HOM05D003797 ORTHO05D004370 2.7e-14 82.4 75 54.7
SEGI_39927 Sequoiadendron giganteum HOM05D003797 ORTHO05D004370 2.7e-14 82.4 80 56.2
COL.COLO4_27614 Corchorus olitorius HOM05D003797 ORTHO05D004370 4.7e-14 81.6 70 64.3
unitig_52.g17091 Utricularia gibba HOM05D003797 ORTHO05D004370 1.1e-10 70.5 56 64.3
Hma1.2p1_1538F.1_g289560 Hydrangea macrophylla HOM05D003797 ORTHO05D004370 1.8e-10 69.7 105 42.9
unitig_29.g31879 Utricularia gibba HOM05D003797 ORTHO05D004370 3.2e-07 58.9 38 71.1
VMungo0540G0471 Vigna mungo HOM05D003797 ORTHO05D437409 8.0e-06 54.3 57 59.6


User provided reference genes

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