Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.2e-169 599.7 293 100.0
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.1e-142 509.2 340 77.1
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 3.1e-114 415.6 337 62.0
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.5e-103 380.2 339 56.9
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 3.1e-98 362.5 318 58.5
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 4.1e-98 362.1 338 55.6
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 1.6e-97 360.1 339 54.6
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 2.3e-96 356.3 339 54.0
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 5.0e-96 355.1 336 54.8
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 5.0e-96 355.1 339 54.9
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 5.0e-96 355.1 338 55.0
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 1.9e-95 353.2 339 54.3
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 2.8e-94 349.4 336 52.7
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 1.4e-93 347.1 339 53.4
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.8e-93 346.7 332 55.1
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 6.8e-93 344.7 294 61.2
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 8.9e-93 344.4 337 53.1
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 1.5e-92 343.6 339 52.8
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 2.0e-92 343.2 338 52.7
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 2.6e-92 342.8 336 53.0
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 5.7e-92 341.7 322 55.6
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 7.5e-92 341.3 332 54.8
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 7.5e-92 341.3 332 54.5
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 1.3e-91 340.5 342 51.5
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 2.8e-91 339.3 339 51.9
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 3.7e-91 339.0 338 51.8
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 4.9e-91 338.6 326 54.6
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 4.9e-91 338.6 329 54.4
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 8.3e-91 337.8 292 57.5
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 8.3e-91 337.8 339 51.6
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 1.4e-90 337.0 339 52.8
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 1.8e-90 336.7 343 51.3
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 1.8e-90 336.7 332 53.9
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 4.1e-90 335.5 332 53.6
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 5.4e-90 335.1 340 51.5
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 5.4e-90 335.1 339 52.5
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 1.0e-88 330.9 335 49.9
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.7e-88 330.1 335 52.5
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 1.7e-88 330.1 339 52.5
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.3e-88 329.7 339 48.4
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 2.3e-88 329.7 341 50.4
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 5.0e-88 328.6 325 51.4
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 5.0e-88 328.6 338 50.6
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 6.6e-88 328.2 338 50.0
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 8.6e-88 327.8 330 51.5
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 1.1e-87 327.4 339 51.0
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 1.5e-87 327.0 338 51.2
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.9e-87 326.6 339 51.3
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 2.5e-87 326.2 327 52.6
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 2.5e-87 326.2 339 50.4
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 4.3e-87 325.5 330 50.6
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 4.3e-87 325.5 328 51.2
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 9.5e-87 324.3 330 51.2
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.6e-86 323.6 330 50.9
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.6e-86 323.6 341 49.6
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 1.6e-86 323.6 338 50.0
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 2.8e-86 322.8 334 50.9
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 3.6e-86 322.4 330 50.9
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 4.7e-86 322.0 332 48.5
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 8.0e-86 321.2 337 50.4
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 1.0e-85 320.9 352 48.6
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 2.3e-85 319.7 326 49.4
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 1.5e-84 317.0 330 50.9
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 2.6e-84 316.2 335 49.3
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 4.4e-84 315.5 332 48.8
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 9.8e-84 314.3 337 49.9
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 1.7e-83 313.5 334 49.4
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 2.2e-83 313.2 295 52.9
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 4.9e-83 312.0 335 47.5
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 4.9e-83 312.0 331 49.2
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 6.4e-83 311.6 332 48.5
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 2.4e-82 309.7 313 50.8
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 3.2e-82 309.3 306 52.0
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 5.4e-82 308.5 313 50.8
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 2.7e-81 306.2 337 48.7
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 3.9e-80 302.4 339 48.1
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 8.6e-80 301.2 298 53.4
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 2.5e-79 299.7 280 53.2
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 1.3e-75 287.3 330 46.4
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 4.9e-75 285.4 343 45.8
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 1.6e-73 280.4 339 45.1
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 2.7e-73 279.6 334 43.4
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 8.6e-72 274.6 338 43.8
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 2.5e-71 273.1 285 49.1
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 3.3e-71 272.7 339 44.0
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 1.2e-70 270.8 332 45.5
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 1.6e-70 270.4 338 43.8
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 4.7e-70 268.9 339 44.5
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 2.0e-68 263.5 274 48.9
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 4.4e-68 262.3 286 46.2
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 4.4e-68 262.3 337 43.9
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 5.8e-68 261.9 337 43.9
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 8.3e-67 258.1 324 42.3
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.4e-66 257.3 342 43.0
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.4e-66 257.3 342 43.0
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 1.9e-66 256.9 338 42.9
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 2.4e-66 256.5 341 41.3
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 2.7e-65 253.1 324 42.3
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.0e-64 251.1 337 39.8
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.7e-64 250.4 338 41.1
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 3.9e-64 249.2 250 51.2
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 1.9e-63 246.9 340 40.6
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 8.1e-62 241.5 280 46.1
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 4.2e-58 229.2 239 49.4
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.1e-53 214.5 286 38.8
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 1.4e-50 204.1 220 48.6
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 2.7e-49 199.9 296 38.5
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 6.6e-48 195.3 286 37.4
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 8.7e-48 194.9 345 35.1
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 1.1e-47 194.5 332 35.5
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 2.5e-47 193.4 358 31.6
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 9.0e-45 184.9 297 38.4
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.5e-44 184.1 334 32.3
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-40 171.4 267 34.8
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.0e-36 157.1 141 52.5
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 2.5e-34 150.2 282 32.3
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-32 144.8 311 31.5
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 3.3e-31 139.8 145 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.3e-31 139.4 287 30.3
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.6e-30 137.5 333 30.3
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.2e-30 135.6 286 29.7
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.2e-30 135.6 294 30.6
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.2e-28 131.3 305 29.8
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.9e-27 126.7 297 30.3
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-27 125.6 317 27.4
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-27 125.6 298 30.2
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.4e-26 124.4 216 31.5
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 1.9e-26 124.0 290 26.9
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.1e-25 119.0 310 26.5
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.1e-25 119.0 241 32.0
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.0e-24 116.7 251 32.3
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.3e-22 111.3 201 32.3
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-21 107.8 322 28.6
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-20 104.4 315 27.9
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.8e-19 99.8 315 27.0
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 7.2e-18 95.5 219 30.6
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 2.7e-17 93.6 206 28.6
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.1e-13 78.6 269 24.9
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-12 77.0 70 44.3
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.7e-09 66.2 73 41.1
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 2.6e-07 60.5 46 52.2


User provided reference genes

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