Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.6e-91 338.6 157 100.0
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 2.6e-91 338.6 157 100.0
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 6.2e-85 317.4 156 92.3
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.1e-84 316.6 156 93.6
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.5e-83 311.2 156 92.3
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.3e-82 309.7 156 91.7
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 1.1e-81 306.6 156 89.7
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.1e-81 306.6 156 91.7
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 5.4e-81 304.3 156 89.1
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 5.4e-81 304.3 156 91.0
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.6e-80 302.8 156 89.1
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 2.7e-80 302.0 156 89.1
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 3.5e-80 301.6 156 87.2
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.6e-80 301.2 156 88.5
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 4.6e-80 301.2 156 89.1
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.0e-79 300.1 156 89.1
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 1.8e-79 299.3 156 87.8
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 1.8e-79 299.3 156 88.5
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 2.3e-79 298.9 156 88.5
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.0e-79 298.5 156 89.1
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 3.0e-79 298.5 156 89.1
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 3.9e-79 298.1 156 87.2
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 5.1e-79 297.7 156 87.8
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 6.7e-79 297.4 156 87.2
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 6.7e-79 297.4 156 88.5
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 8.7e-79 297.0 156 87.2
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 8.7e-79 297.0 156 87.8
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 8.7e-79 297.0 156 86.5
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 8.7e-79 297.0 156 87.2
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 8.7e-79 297.0 156 88.5
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 1.5e-78 296.2 156 86.5
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 1.5e-78 296.2 156 87.8
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 3.3e-78 295.0 156 86.5
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 5.6e-78 294.3 155 87.7
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 7.4e-78 293.9 156 87.2
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 7.4e-78 293.9 156 87.2
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 7.4e-78 293.9 156 85.9
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 7.4e-78 293.9 156 87.8
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 9.6e-78 293.5 156 85.9
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 9.6e-78 293.5 156 87.8
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 9.6e-78 293.5 157 86.6
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 3.7e-77 291.6 156 84.0
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 3.7e-77 291.6 156 87.2
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 4.8e-77 291.2 154 87.0
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 1.4e-76 289.7 156 85.9
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.4e-76 289.7 156 85.3
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 1.8e-76 289.3 156 85.3
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.8e-76 289.3 156 86.5
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 1.8e-76 289.3 156 85.9
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.4e-76 288.9 155 85.2
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 2.4e-76 288.9 156 85.9
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 4.0e-76 288.1 156 85.3
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 6.9e-76 287.3 156 84.6
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.2e-75 286.6 156 83.3
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.2e-75 286.6 156 83.3
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-75 286.6 156 84.0
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.5e-75 286.2 156 82.7
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.5e-75 286.2 156 82.7
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 1.5e-75 286.2 156 86.5
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 2.0e-75 285.8 156 83.3
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 2.0e-75 285.8 156 84.0
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 2.0e-75 285.8 156 84.6
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 2.0e-75 285.8 156 84.6
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 2.0e-75 285.8 156 82.7
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-75 285.4 156 82.7
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 2.6e-75 285.4 156 82.7
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 2.6e-75 285.4 156 83.3
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 2.6e-75 285.4 156 83.3
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.4e-75 285.0 156 83.3
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 3.4e-75 285.0 156 84.6
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 3.4e-75 285.0 156 84.0
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.6e-75 283.9 156 84.0
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.6e-75 283.9 156 84.0
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 7.6e-75 283.9 156 84.0
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 9.9e-75 283.5 156 84.0
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 9.9e-75 283.5 156 82.7
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 1.3e-74 283.1 156 82.7
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 1.7e-74 282.7 156 84.0
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 1.7e-74 282.7 156 82.7
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 1.7e-74 282.7 156 84.6
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 2.2e-74 282.3 156 82.1
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 2.2e-74 282.3 156 82.1
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 2.2e-74 282.3 156 82.1
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 2.2e-74 282.3 156 82.7
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.9e-74 282.0 156 83.3
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 2.9e-74 282.0 156 84.6
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.9e-74 282.0 156 84.0
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 2.9e-74 282.0 156 81.4
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 3.8e-74 281.6 156 82.1
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 3.8e-74 281.6 156 82.1
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.8e-74 281.6 156 83.3
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 3.8e-74 281.6 156 83.3
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 4.9e-74 281.2 156 82.7
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 4.9e-74 281.2 155 83.2
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 6.4e-74 280.8 156 83.3
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 6.4e-74 280.8 156 83.3
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 6.4e-74 280.8 156 83.3
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 8.4e-74 280.4 156 82.1
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 8.4e-74 280.4 156 82.7
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 8.4e-74 280.4 156 82.1
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 1.9e-73 279.3 154 84.4
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.4e-73 278.9 156 82.7
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 2.4e-73 278.9 156 82.1
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 2.4e-73 278.9 156 80.8
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 3.2e-73 278.5 156 82.1
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 4.2e-73 278.1 157 82.2
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 4.2e-73 278.1 157 82.2
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 5.5e-73 277.7 155 80.6
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 5.5e-73 277.7 154 83.1
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 7.1e-73 277.3 156 80.8
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 7.1e-73 277.3 156 80.8
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 7.1e-73 277.3 154 82.5
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 9.3e-73 276.9 157 81.5
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 9.3e-73 276.9 157 81.5
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 9.3e-73 276.9 157 81.5
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 9.3e-73 276.9 154 81.8
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.2e-72 276.6 156 81.4
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 1.2e-72 276.6 156 83.3
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 2.7e-72 275.4 154 81.2
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 2.7e-72 275.4 156 80.1
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 4.6e-72 274.6 156 82.1
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 4.6e-72 274.6 154 81.8
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 7.9e-72 273.9 156 81.4
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 2.3e-71 272.3 156 81.4
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.1e-70 270.0 173 75.1
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.1e-70 270.0 156 80.8
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 1.5e-70 269.6 157 79.6
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.9e-70 269.2 156 79.5
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 7.4e-70 267.3 156 78.2
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 2.1e-69 265.8 155 79.4
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 8.2e-69 263.8 157 76.4
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 8.2e-69 263.8 156 78.8
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 2.4e-68 262.3 156 76.3
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.4e-68 262.3 156 76.9
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 4.0e-68 261.5 156 76.3
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 7.6e-67 257.3 156 75.6
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.7e-66 256.1 155 75.5
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 7.1e-65 250.8 156 72.4
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 7.1e-65 250.8 156 72.4
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 1.0e-63 246.9 137 84.7
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.1e-62 243.4 156 75.6
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 1.3e-61 240.0 209 59.3
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.9e-58 228.8 155 69.7
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 3.2e-57 225.3 156 68.6
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 5.5e-57 224.6 155 69.0
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 4.6e-56 221.5 155 69.7
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 5.1e-55 218.0 156 65.4
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 5.1e-55 218.0 160 65.0
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.7e-55 217.6 152 67.8
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 6.7e-39 164.5 173 50.3
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.8e-37 159.1 155 54.8
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.1e-36 155.2 88 81.8
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 3.8e-34 148.7 97 71.1
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 6.3e-29 131.3 83 71.1
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.4e-28 130.2 154 41.6
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 3.5e-27 125.6 83 67.5
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 7.7e-27 124.4 83 66.3
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 3.2e-25 119.0 75 73.3
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 9.4e-25 117.5 87 57.5
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.2e-24 117.1 150 38.0
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.6e-19 100.1 154 34.4
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 3.6e-16 89.0 50 74.0
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 1.2e-14 84.0 96 45.8
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.1e-12 77.4 45 73.3
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 1.9e-09 66.6 110 40.9
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 9.8e-06 54.3 30 73.3


User provided reference genes

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