Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024002 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D001037 1.7e-57 225.7 111 100.0
Lsat_1_v5_gn_5_71201 Lactuca sativa HOM05D000732 ORTHO05D001037 3.6e-10 68.6 91 45.1
Dinv05084 Davidia involucrata HOM05D000732 ORTHO05D001037 4.6e-10 68.2 89 46.1
Lj3A42T21 Lonicera japonica HOM05D000732 ORTHO05D001037 7.9e-10 67.4 89 44.9
Lj3C50T6 Lonicera japonica HOM05D000732 ORTHO05D001037 7.9e-10 67.4 89 44.9
Actinidia27087 Actinidia chinensis HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 44.9
Actinidia34579 Actinidia chinensis HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 44.9
Aqoxy2G04130 Aquilegia oxysepala HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 44.9
CSS0021096 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 44.9
CSS0031933 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 44.9
CANSAT78G1705 Cannabis sativa HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 43.8
Dinv44159 Davidia involucrata HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 44.9
HanXRQChr12g0379701 Helianthus annuus HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 41.6
HanXRQChr15g0469171 Helianthus annuus HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 41.6
Peaxi162Scf00180g00312 Petunia axillaris HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 43.8
GSVIVG01010850001 Vitis vinifera HOM05D000732 ORTHO05D001037 1.4e-09 66.6 89 44.9
CAN.G65.154 Capsicum annuum HOM05D000732 ORTHO05D001037 1.8e-09 66.2 89 43.8
Hma1.2p1_0324F.1_g125630 Hydrangea macrophylla HOM05D000732 ORTHO05D001037 1.8e-09 66.2 89 43.8
Nn7g37579 Nelumbo nucifera HOM05D000732 ORTHO05D001037 1.8e-09 66.2 89 43.8
Nitab4.5_0001586g0200 Nicotiana tabacum HOM05D000732 ORTHO05D001037 1.8e-09 66.2 89 43.8
Nitab4.5_0002722g0020 Nicotiana tabacum HOM05D000732 ORTHO05D001037 1.8e-09 66.2 89 43.8
Phvul.011G052900 Phaseolus vulgaris HOM05D000732 ORTHO05D001037 1.8e-09 66.2 72 54.2
Potri.017G026200 Populus trichocarpa HOM05D000732 ORTHO05D001037 1.8e-09 66.2 100 42.0
Solyc06g073110.3 Solanum lycopersicum HOM05D000732 ORTHO05D001037 1.8e-09 66.2 89 43.8
Sopen06g029460 Solanum pennellii HOM05D000732 ORTHO05D001037 1.8e-09 66.2 89 43.8
TAR362G0289 Trochodendron aralioides HOM05D000732 ORTHO05D001037 1.8e-09 66.2 89 43.8
VMungo1127G0028 Vigna mungo HOM05D000732 ORTHO05D001037 1.8e-09 66.2 72 54.2
MSTRG.24573 Avicennia marina HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 43.8
BcaC07g41927 Brassica carinata HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 43.8
BcaNung06266 Brassica carinata HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 44.9
BolC5t29442H Brassica oleracea HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 44.9
BraA09t41920Z Brassica rapa HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 44.9
Carub.0001s0810 Capsella rubella HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 44.9
CARHR008680 Cardamine hirsuta HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 44.9
Duzib268G0812 Durio zibethinus HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 44.9
Thhalv10006887m.g Eutrema salsugineum HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 44.9
Glyma.11G126000 Glycine max HOM05D000732 ORTHO05D001037 2.3e-09 65.9 72 54.2
Glyma.12G050600 Glycine max HOM05D000732 ORTHO05D001037 2.3e-09 65.9 72 54.2
HanXRQChr12g0380281 Helianthus annuus HOM05D000732 ORTHO05D001037 2.3e-09 65.9 81 46.9
Lj3g0012404 Lotus japonicus HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 43.8
Manes.11G125500 Manihot esculenta HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 43.8
Sabra07G0106800 Salix brachista HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 43.8
Sabra07G0118700 Salix brachista HOM05D000732 ORTHO05D001037 2.3e-09 65.9 89 43.8
AT1G08760 Arabidopsis thaliana HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
arahy.Tifrunner.gnm1.ann1.F7AVJ6 Arachis hypogaea HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
MSTRG.22011 Avicennia marina HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
BcaB03g13315 Brassica carinata HOM05D000732 ORTHO05D001037 3.0e-09 65.5 113 40.7
BraA06t23776Z Brassica rapa HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Cpa.g.sc9.321 Carica papaya HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
CiPaw.01G095800 Carya illinoinensis HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Ca_01248_v3 Cicer arietinum L. HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Ca_20803_v3 Cicer arietinum L. HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Ciclev10018994m.g Citrus clementina HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Duzib151G0684 Durio zibethinus HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Eucgr.H00341 Eucalyptus grandis HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
FvH4_1g23460 Fragaria vesca HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
FAN19G1687 Fragaria x ananassa HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
FAN23G1643 Fragaria x ananassa HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
FAN26G2746 Fragaria x ananassa HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
FAN28G0453 Fragaria x ananassa HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Gohir.A02G011100 Gossypium hirsutum HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Gohir.D02G011900 Gossypium hirsutum HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Gohir.D10G126800 Gossypium hirsutum HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Gorai.005G015300 Gossypium raimondii HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Gorai.011G139700 Gossypium raimondii HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Lj3g0019803 Lotus japonicus HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
MD13G1256500 Malus domestica HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Psat5g290360 Pisum sativum HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Prupe.1G198600 Prunus persica HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
RcHm_v2.0_Chr2g0118831 Rosa chinensis HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Sp1g07400 Schrenkiella parvula HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Sc13g0006710 Simmondsia chinensis HOM05D000732 ORTHO05D001037 3.0e-09 65.5 91 44.0
THA.LOC104805816 Tarenaya hassleriana HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Thecc.04G174200 Theobroma cacao HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
TPR.G6594 Trifolium pratense HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
unitig_18.g30054 Utricularia gibba HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 44.9
VMungo1080G0037 Vigna mungo HOM05D000732 ORTHO05D001037 3.0e-09 65.5 89 43.8
Ah.13g073720 Amaranthus hybridus HOM05D000732 ORTHO05D001037 3.9e-09 65.1 89 42.7
EL10Ac3g06015 Beta vulgaris HOM05D000732 ORTHO05D001037 3.9e-09 65.1 72 52.8
AUR62002353 Chenopodium quinoa HOM05D000732 ORTHO05D001037 3.9e-09 65.1 89 42.7
AUR62023831 Chenopodium quinoa HOM05D000732 ORTHO05D001037 3.9e-09 65.1 89 42.7
Haze_01450 Corylus avellana HOM05D000732 ORTHO05D001037 3.9e-09 65.1 89 42.7
unitig_578.g16256 Utricularia gibba HOM05D000732 ORTHO05D001037 3.9e-09 65.1 89 43.8
AL1G19190 Arabidopsis lyrata HOM05D000732 ORTHO05D001037 5.1e-09 64.7 89 43.8
Migut.N03096 Erythranthe guttata HOM05D000732 ORTHO05D001037 5.1e-09 64.7 89 43.8
Gohir.A10G140000 Gossypium hirsutum HOM05D000732 ORTHO05D001037 5.1e-09 64.7 72 52.8
Lalb_Chr22g0352061 Lupinus albus HOM05D000732 ORTHO05D001037 5.1e-09 64.7 89 42.7
MD04G1045400 Malus domestica HOM05D000732 ORTHO05D001037 5.1e-09 64.7 89 43.8
Medtr4g068050 Medicago truncatula HOM05D000732 ORTHO05D001037 5.1e-09 64.7 89 42.7
QL10p051216 Quercus lobata HOM05D000732 ORTHO05D001037 5.1e-09 64.7 89 42.7
BolC8t52511H Brassica oleracea HOM05D000732 ORTHO05D001037 6.7e-09 64.3 114 41.2
ECA233G5137 Erigeron canadensis HOM05D000732 ORTHO05D001037 6.7e-09 64.3 90 44.4
Psat7g209400 Pisum sativum HOM05D000732 ORTHO05D001037 6.7e-09 64.3 89 42.7
PGR083G2190 Punica granatum HOM05D000732 ORTHO05D001037 6.7e-09 64.3 89 42.7
Aa31LG2G18700 Aethionema arabicum HOM05D000732 ORTHO05D001037 8.8e-09 63.9 89 42.7
Potri.007G131600 Populus trichocarpa HOM05D000732 ORTHO05D001037 8.8e-09 63.9 89 42.7
Sabra17G0000900 Salix brachista HOM05D000732 ORTHO05D001037 8.8e-09 63.9 100 41.0
Sabra17G0016000 Salix brachista HOM05D000732 ORTHO05D001037 8.8e-09 63.9 100 41.0
SalBow6G2995 Salvia bowleyana HOM05D000732 ORTHO05D001037 8.8e-09 63.9 89 42.7
THA.LOC104821115 Tarenaya hassleriana HOM05D000732 ORTHO05D001037 8.8e-09 63.9 89 42.7
TWI15G0939 Tripterygium wilfordii HOM05D000732 ORTHO05D001037 8.8e-09 63.9 55 61.8
Lsat_1_v5_gn_3_109761 Lactuca sativa HOM05D000732 ORTHO05D001037 1.1e-08 63.5 89 42.7
MBI07_g18521_MAGBIO Magnolia biondii HOM05D000732 ORTHO05D001037 1.1e-08 63.5 72 51.4
Hund03179 Selenicereus undatus HOM05D000732 ORTHO05D001037 1.1e-08 63.5 55 58.2
TPR.G34245 Trifolium pratense HOM05D000732 ORTHO05D001037 1.1e-08 63.5 89 41.6
TWI38G1157 Tripterygium wilfordii HOM05D000732 ORTHO05D001037 1.1e-08 63.5 72 51.4
Atru.chr4.1267 Acer truncatum HOM05D000732 ORTHO05D001037 1.5e-08 63.2 54 61.1
Cfa015199 Carpinus fangiana HOM05D000732 ORTHO05D001037 1.5e-08 63.2 89 41.6
Oeu034443.3 Olea europaea HOM05D000732 ORTHO05D001037 1.5e-08 63.2 72 50.0
Haze_08206 Corylus avellana HOM05D000732 ORTHO05D001037 1.9e-08 62.8 89 41.6
Lalb_Chr14g0372531 Lupinus albus HOM05D000732 ORTHO05D001037 1.9e-08 62.8 51 64.7
Os09g0516700 Oryza sativa ssp. japonica HOM05D000732 ORTHO05D001037 1.9e-08 62.8 89 42.7
Rhsim09G0021700 Rhododendron simsii HOM05D000732 ORTHO05D001037 1.9e-08 62.8 89 41.6
RhsimUnG0138000 Rhododendron simsii HOM05D000732 ORTHO05D001037 1.9e-08 62.8 89 41.6
Hund12403 Selenicereus undatus HOM05D000732 ORTHO05D001037 1.9e-08 62.8 89 41.6
vmacro00615 Vaccinium macrocarpon HOM05D000732 ORTHO05D001037 1.9e-08 62.8 89 42.7
vmacro00678 Vaccinium macrocarpon HOM05D000732 ORTHO05D001037 1.9e-08 62.8 89 42.7
HPP92_005580 Vanilla planifolia HOM05D000732 ORTHO05D001037 1.9e-08 62.8 89 41.6
ClCG06G000970 Citrullus lanatus HOM05D000732 ORTHO05D001037 2.5e-08 62.4 89 42.7
MELO3C022442.2 Cucumis melo HOM05D000732 ORTHO05D001037 2.5e-08 62.4 89 42.7
CsaV3_6G006820 Cucumis sativus L. HOM05D000732 ORTHO05D001037 2.5e-08 62.4 89 42.7
Lj6C108T8 Lonicera japonica HOM05D000732 ORTHO05D001037 2.5e-08 62.4 89 41.6
Manes.04G047100 Manihot esculenta HOM05D000732 ORTHO05D001037 2.5e-08 62.4 85 42.4
Sed0000679 Sechium edule HOM05D000732 ORTHO05D001037 2.5e-08 62.4 89 42.7
Sed0021620 Sechium edule HOM05D000732 ORTHO05D001037 2.5e-08 62.4 89 42.7
BraA02t06951Z Brassica rapa HOM05D000732 ORTHO05D016836 3.3e-08 62.0 89 43.8
Oeu020492.1 Olea europaea HOM05D000732 ORTHO05D001037 3.3e-08 62.0 89 39.3
Zm00001eb318630 Zea mays HOM05D000732 ORTHO05D001037 3.3e-08 62.0 89 41.6
ATR0743G126 Amborella trichopoda HOM05D000732 ORTHO05D001037 4.3e-08 61.6 89 41.6
DCAR_028427 Daucus carota HOM05D000732 ORTHO05D001037 4.3e-08 61.6 89 40.4
SEGI_19662 Sequoiadendron giganteum HOM05D000732 ORTHO05D001037 4.3e-08 61.6 89 40.4
HPP92_005595 Vanilla planifolia HOM05D000732 ORTHO05D001037 4.3e-08 61.6 89 40.4
A05p19080 Brassica napus HOM05D000732 ORTHO05D001037 5.7e-08 61.2 89 42.7
Glyma.15G028800 Glycine max HOM05D000732 ORTHO05D001037 7.4e-08 60.8 90 43.3
HanXRQChr13g0419851 Helianthus annuus HOM05D000732 ORTHO05D001037 7.4e-08 60.8 55 56.4
Lalb_Chr24g0396741 Lupinus albus HOM05D000732 ORTHO05D001037 7.4e-08 60.8 91 41.8
Medtr2g099095 Medicago truncatula HOM05D000732 ORTHO05D001037 7.4e-08 60.8 90 43.3
Os08g0541500 Oryza sativa ssp. japonica HOM05D000732 ORTHO05D001037 9.7e-08 60.5 55 58.2
PSO017G4930 Papaver somniferum HOM05D000732 ORTHO05D001037 9.7e-08 60.5 89 40.4
PSO675G8077 Papaver somniferum HOM05D000732 ORTHO05D001037 9.7e-08 60.5 89 40.4
Zm00001eb037300 Zea mays HOM05D000732 ORTHO05D001037 9.7e-08 60.5 55 58.2
CDE02G0077 Ceratophyllum demersum HOM05D000732 ORTHO05D001037 1.3e-07 60.1 89 40.4
CDE09G0408 Ceratophyllum demersum HOM05D000732 ORTHO05D001037 1.3e-07 60.1 89 40.4
Lalb_Chr03g0026011 Lupinus albus HOM05D000732 ORTHO05D001037 1.3e-07 60.1 90 42.2
BcaC02g10480 Brassica carinata HOM05D000732 ORTHO05D001037 1.7e-07 59.7 105 41.0
SGA_v2.0_scaffold322G48601 Striga asiatica HOM05D000732 ORTHO05D001037 1.7e-07 59.7 90 42.2
CiPaw.02G051800 Carya illinoinensis HOM05D000732 ORTHO05D001037 2.2e-07 59.3 89 40.4
Glyma.13G345500 Glycine max HOM05D000732 ORTHO05D001037 2.2e-07 59.3 90 42.2
Peaxi162Scf00504g00098 Petunia axillaris HOM05D000732 ORTHO05D001037 2.2e-07 59.3 90 41.1
Zm00001eb102800 Zea mays HOM05D000732 ORTHO05D001037 4.8e-07 58.2 89 39.3
SEGI_12761 Sequoiadendron giganteum HOM05D000732 ORTHO05D001037 6.3e-07 57.8 89 38.2
ECA240G3135 Erigeron canadensis HOM05D000732 ORTHO05D001037 8.2e-07 57.4 91 39.6
Pp3c7_26930 Physcomitrium patens HOM05D000732 ORTHO05D001037 8.2e-07 57.4 89 37.1
TAR626G1308 Trochodendron aralioides HOM05D000732 ORTHO05D001037 1.8e-06 56.2 51 56.9
BcaC02g10479 Brassica carinata HOM05D000732 ORTHO05D001037 2.4e-06 55.8 70 51.4
CDE09G0726 Ceratophyllum demersum HOM05D000732 ORTHO05D001037 3.1e-06 55.5 55 54.5
arahy.Tifrunner.gnm1.ann1.3BRQ4W Arachis hypogaea HOM05D000732 ORTHO05D001037 4.1e-06 55.1 95 40.0
arahy.Tifrunner.gnm1.ann1.89WMF4 Arachis hypogaea HOM05D000732 ORTHO05D001037 4.1e-06 55.1 95 40.0
A10p08330 Brassica napus HOM05D000732 ORTHO05D001037 4.1e-06 55.1 89 41.6
BraSC37t46170Z Brassica rapa HOM05D000732 ORTHO05D001037 4.1e-06 55.1 89 41.6
Cfa019531 Carpinus fangiana HOM05D000732 ORTHO05D001037 5.3e-06 54.7 50 58.0
Mapoly0073s0066 Marchantia polymorpha HOM05D000732 ORTHO05D001037 6.9e-06 54.3 89 36.0
BcaC08g45933 Brassica carinata HOM05D000732 ORTHO05D001037 9.1e-06 53.9 55 58.2


User provided reference genes

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