Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 3.5e-127 458.4 241 100.0
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.4e-104 383.3 242 88.4
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 5.6e-77 291.6 242 65.3
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.1e-67 259.2 244 59.8
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 3.8e-65 252.3 240 62.9
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 6.4e-65 251.5 241 60.6
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.1e-64 250.8 241 59.8
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 7.1e-64 248.1 241 58.9
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 9.3e-64 247.7 243 53.5
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 1.6e-63 246.9 248 54.8
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 7.9e-63 244.6 241 55.6
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 8.7e-62 241.1 238 60.1
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 3.3e-61 239.2 243 57.6
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 4.3e-61 238.8 238 53.8
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 9.6e-61 237.7 238 53.8
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 4.8e-60 235.3 242 54.5
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 4.5e-58 228.8 248 50.4
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.3e-57 227.3 248 52.0
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 6.4e-57 224.9 147 72.1
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.4e-56 223.0 248 51.2
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.2e-56 222.2 242 51.7
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.2e-56 222.2 242 51.7
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 4.2e-56 222.2 248 50.8
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.0e-54 217.6 242 51.2
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.3e-54 217.2 248 50.4
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 5.6e-53 211.8 243 47.3
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 5.6e-53 211.8 238 52.9
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.1e-52 209.9 166 63.9
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 2.6e-50 203.0 242 50.4
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 4.5e-50 202.2 171 57.9
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 2.2e-49 199.9 164 61.0
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 1.1e-48 197.6 253 45.8
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 4.2e-48 195.7 122 69.7
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 7.1e-48 194.9 224 48.2
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 2.7e-47 193.0 238 44.1
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 3.3e-37 159.5 241 41.9
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 1.2e-34 151.0 237 38.4
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 3.4e-34 149.4 282 37.2
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 1.3e-33 147.5 201 46.8
Dinv20324 Davidia involucrata HOM05D005772 ORTHO05D006468 1.7e-33 147.1 243 46.5
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 5.5e-32 142.1 135 49.6
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.2e-31 141.0 273 35.5
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 2.7e-31 139.8 221 36.7
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 3.0e-30 136.3 135 48.1
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 8.8e-30 134.8 184 45.7
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 2.6e-29 133.3 113 54.0
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 7.4e-29 131.7 124 50.8
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 7.4e-29 131.7 124 50.8
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 7.4e-29 131.7 124 50.8
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 1.3e-28 131.0 113 53.1
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 1.7e-28 130.6 224 34.8
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 2.2e-28 130.2 147 45.6
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.1e-27 127.9 153 43.1
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 2.4e-27 126.7 169 42.6
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 4.1e-27 125.9 210 42.9
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 6.9e-27 125.2 123 46.3
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 1.5e-26 124.0 151 45.7
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 5.9e-26 122.1 146 42.5
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 7.7e-26 121.7 170 40.0
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.3e-25 120.9 123 44.7
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 1.7e-25 120.6 158 43.7
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.8e-25 119.4 169 42.6
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 5.0e-25 119.0 106 50.9
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 8.5e-25 118.2 215 35.3
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.4e-24 117.5 167 40.1
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 1.9e-24 117.1 175 40.6
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 4.2e-24 115.9 169 42.0
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 5.5e-24 115.5 166 39.2
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 7.2e-24 115.2 165 40.0
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 9.4e-24 114.8 174 40.2
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 1.2e-23 114.4 142 44.4
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 1.2e-23 114.4 135 47.4
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 2.1e-23 113.6 152 40.8
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 2.7e-23 113.2 187 40.1
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 4.7e-23 112.5 143 43.4
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 7.9e-23 111.7 179 37.4
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 7.9e-23 111.7 173 40.5
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 7.9e-23 111.7 202 36.1
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.0e-22 111.3 162 40.7
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 2.3e-22 110.2 142 42.3
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 2.3e-22 110.2 156 44.9
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.9e-22 109.4 169 40.8
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 5.2e-22 109.0 180 37.8
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 6.7e-22 108.6 119 46.2
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 6.7e-22 108.6 172 37.8
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 6.7e-22 108.6 181 37.0
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 8.8e-22 108.2 135 42.2
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 1.5e-21 107.5 186 38.7
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 2.0e-21 107.1 117 45.3
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 3.3e-21 106.3 159 42.8
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 5.7e-21 105.5 127 40.9
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 9.7e-21 104.8 136 41.9
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.2e-20 103.6 170 40.0
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 1.1e-19 101.3 118 43.2
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 1.8e-19 100.5 124 41.1
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.1e-19 99.8 121 42.1
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 5.3e-19 99.0 168 37.5
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 7.0e-19 98.6 162 34.6
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 1.2e-18 97.8 123 41.5
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 1.6e-18 97.4 116 44.0
QL06p047014 Quercus lobata HOM05D001071 ORTHO05D006468 2.2e-17 93.6 147 47.6
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 8.5e-17 91.7 178 41.0
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.9e-16 90.5 135 40.0
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 7.2e-16 88.6 97 44.3
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 7.2e-16 88.6 166 32.5
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 9.4e-16 88.2 118 35.6
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.6e-15 87.4 118 33.9
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 2.7e-15 86.7 136 34.6
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 4.7e-15 85.9 171 35.7
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 6.1e-15 85.5 119 33.6
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.3e-14 83.6 165 31.5
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 6.7e-14 82.0 137 33.6
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 1.2e-13 81.3 82 47.6
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 2.6e-13 80.1 122 32.0
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 3.3e-13 79.7 90 48.9
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 4.4e-13 79.3 119 35.3
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 5.7e-13 79.0 118 32.2
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 1.3e-12 77.8 103 33.0
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 1.3e-12 77.8 103 33.0
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.1e-11 74.7 147 29.3
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 1.4e-11 74.3 178 29.8
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 1.8e-11 73.9 102 35.3
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 2.2e-09 67.0 111 42.3
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 2.5e-08 63.5 84 29.8
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 7.2e-08 62.0 86 44.2
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 9.4e-08 61.6 68 41.2
ATR0709G081 Amborella trichopoda HOM05D005772 ORTHO05D006468 1.6e-07 60.8 88 40.9
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 1.6e-07 60.8 84 28.6
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.6e-07 60.8 65 41.5
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 3.6e-07 59.7 135 30.4
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 6.1e-07 58.9 69 44.9
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 1.0e-06 58.2 69 44.9


User provided reference genes

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