Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 9.0e-60 233.8 156 100.0
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 3.2e-25 119.0 159 49.7
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 8.2e-21 104.4 163 46.6
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 3.1e-20 102.4 168 47.6
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 2.5e-17 92.8 101 58.4
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 1.2e-16 90.5 181 39.8
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.3e-15 86.3 188 41.0
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.0e-15 85.9 183 42.1
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.5e-14 83.6 183 39.9
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.5e-14 83.6 106 48.1
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.5e-14 83.6 73 69.9
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.5e-14 83.6 76 64.5
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 2.0e-14 83.2 178 51.7
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 2.6e-14 82.8 182 39.6
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 4.4e-14 82.0 180 40.0
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.7e-14 81.6 74 64.9
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 7.4e-14 81.3 77 59.7
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 9.7e-14 80.9 77 59.7
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 9.7e-14 80.9 81 53.1
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 9.7e-14 80.9 66 66.7
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.7e-13 80.1 167 43.7
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.7e-13 80.1 72 66.7
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 2.2e-13 79.7 103 49.5
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.2e-13 79.7 112 46.4
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.2e-13 79.7 112 46.4
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.8e-13 78.6 74 63.5
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 4.8e-13 78.6 86 58.1
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 6.3e-13 78.2 124 49.2
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 8.2e-13 77.8 73 60.3
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 8.2e-13 77.8 119 51.3
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 8.2e-13 77.8 75 54.7
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.1e-12 77.4 107 48.6
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.1e-12 77.4 91 53.8
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-12 77.0 84 54.8
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-12 77.0 84 54.8
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.4e-12 77.0 84 54.8
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.4e-12 77.0 70 65.7
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.8e-12 76.6 163 40.5
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.4e-12 76.3 68 66.2
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.4e-12 76.3 96 53.1
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 3.1e-12 75.9 80 57.5
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 3.1e-12 75.9 80 57.5
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 3.1e-12 75.9 77 59.7
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 4.1e-12 75.5 80 56.2
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-12 75.5 83 55.4
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 4.1e-12 75.5 75 57.3
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.1e-12 75.5 78 56.4
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 5.3e-12 75.1 77 58.4
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 5.3e-12 75.1 75 56.0
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.3e-12 75.1 82 57.3
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 7.0e-12 74.7 80 56.2
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 7.0e-12 74.7 78 55.1
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 7.0e-12 74.7 72 55.6
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 9.1e-12 74.3 177 39.5
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 9.1e-12 74.3 77 54.5
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 9.1e-12 74.3 80 56.2
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 9.1e-12 74.3 80 56.2
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 9.1e-12 74.3 124 46.0
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 9.1e-12 74.3 77 57.1
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.2e-11 73.9 69 58.0
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-11 73.9 96 53.1
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.2e-11 73.9 81 54.3
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 1.2e-11 73.9 83 55.4
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 1.2e-11 73.9 83 55.4
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.2e-11 73.9 178 36.5
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.6e-11 73.6 81 56.8
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.6e-11 73.6 109 46.8
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.6e-11 73.6 73 57.5
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.6e-11 73.6 119 43.7
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 2.0e-11 73.2 104 50.0
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 2.6e-11 72.8 71 57.7
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.6e-11 72.8 67 61.2
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 3.5e-11 72.4 75 53.3
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 3.5e-11 72.4 102 50.0
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.5e-11 72.4 110 44.5
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 3.5e-11 72.4 94 46.8
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 3.5e-11 72.4 77 58.4
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 4.5e-11 72.0 80 55.0
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 4.5e-11 72.0 80 55.0
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.5e-11 72.0 124 45.2
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 4.5e-11 72.0 76 60.5
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 4.5e-11 72.0 101 51.5
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.9e-11 71.6 129 45.7
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 7.7e-11 71.2 71 63.4
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 7.7e-11 71.2 107 48.6
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-10 70.5 177 34.5
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 1.3e-10 70.5 177 34.5
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.3e-10 70.5 187 36.9
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.3e-10 70.5 79 54.4
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.7e-10 70.1 83 51.8
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.7e-10 70.1 64 57.8
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 1.7e-10 70.1 86 50.0
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.2e-10 69.7 99 51.5
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 2.2e-10 69.7 121 43.8
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 2.2e-10 69.7 83 54.2
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 2.9e-10 69.3 103 54.4
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.9e-10 69.3 107 47.7
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 3.8e-10 68.9 82 51.2
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 3.8e-10 68.9 83 53.0
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.8e-10 68.9 101 50.5
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 5.0e-10 68.6 175 36.0
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 5.0e-10 68.6 175 36.0
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 5.0e-10 68.6 100 46.0
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 6.5e-10 68.2 170 41.2
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 8.5e-10 67.8 85 47.1
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 8.5e-10 67.8 94 52.1
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 8.5e-10 67.8 94 52.1
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 8.5e-10 67.8 172 36.6
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-09 67.4 178 35.4
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-09 67.4 81 51.9
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-09 67.4 178 35.4
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-09 67.4 178 35.4
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.1e-09 67.4 79 51.9
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.5e-09 67.0 118 47.5
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-09 67.0 110 46.4
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 1.5e-09 67.0 110 46.4
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.5e-09 67.0 181 32.0
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.5e-09 67.0 68 57.4
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.5e-09 67.0 109 45.0
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.9e-09 66.6 174 37.4
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 3.2e-09 65.9 178 38.8
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 3.2e-09 65.9 73 53.4
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.2e-09 65.9 172 37.8
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 3.2e-09 65.9 98 45.9
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 4.2e-09 65.5 102 42.2
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 5.5e-09 65.1 65 58.5
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 7.2e-09 64.7 79 53.2
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 7.2e-09 64.7 72 52.8
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 7.2e-09 64.7 70 52.9
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.0e-07 60.8 95 45.3
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 1.4e-07 60.5 59 55.9
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.3e-07 59.7 70 51.4
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.0e-07 58.9 116 39.7
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 1.5e-06 57.0 73 54.8
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.5e-06 57.0 190 27.9
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 2.0e-06 56.6 86 44.2
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 2.0e-06 56.6 73 47.9
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 5.7e-06 55.1 115 42.6


User provided reference genes

Program Settings