Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023943 Camellia sinensis var. sinensis HOM05D002463 ORTHO05D002669 2.5e-43 178.3 87 100.0
CSS0029428 Camellia sinensis var. sinensis HOM05D002463 ORTHO05D002669 1.4e-17 92.8 87 57.5
CSS0022251 Camellia sinensis var. sinensis HOM05D002463 ORTHO05D002669 8.9e-17 90.1 80 62.5
CSS0029842 Camellia sinensis var. sinensis HOM05D002463 ORTHO05D002669 8.9e-17 90.1 83 60.2
Rhsim06G0086800 Rhododendron simsii HOM05D002463 ORTHO05D002669 3.8e-15 84.7 83 56.6
Hma1.2p1_2760F.1_g328080 Hydrangea macrophylla HOM05D002463 ORTHO05D002669 8.4e-15 83.6 83 56.6
vmacro21220 Vaccinium macrocarpon HOM05D002463 ORTHO05D002669 5.4e-14 80.9 83 54.2
Actinidia15635 Actinidia chinensis HOM05D002463 ORTHO05D002669 7.1e-14 80.5 43 88.4
CAN.G617.13 Capsicum annuum HOM05D002463 ORTHO05D002669 1.2e-13 79.7 83 53.0
Nitab4.5_0004952g0030 Nicotiana tabacum HOM05D002463 ORTHO05D002669 1.2e-13 79.7 83 53.0
Solyc04g072380.3 Solanum lycopersicum HOM05D002463 ORTHO05D002669 1.2e-13 79.7 83 53.0
Sopen04g028550 Solanum pennellii HOM05D002463 ORTHO05D002669 1.2e-13 79.7 83 53.0
PGSC0003DMG400027565 Solanum tuberosum HOM05D002463 ORTHO05D002669 1.2e-13 79.7 83 53.0
COL.COLO4_16505 Corchorus olitorius HOM05D002463 ORTHO05D002669 2.1e-13 79.0 82 52.4
Gohir.D05G233000 Gossypium hirsutum HOM05D002463 ORTHO05D002669 2.7e-13 78.6 82 52.4
Gorai.009G241100 Gossypium raimondii HOM05D002463 ORTHO05D002669 2.7e-13 78.6 82 52.4
Thecc.08G114400 Theobroma cacao HOM05D002463 ORTHO05D002669 2.7e-13 78.6 82 52.4
Lj1g0023435 Lotus japonicus HOM05D002463 ORTHO05D002669 4.6e-13 77.8 82 52.4
Peaxi162Scf00756g00437 Petunia axillaris HOM05D002463 ORTHO05D002669 4.6e-13 77.8 44 79.5
TWI12G0529 Tripterygium wilfordii HOM05D002463 ORTHO05D002669 4.6e-13 77.8 43 83.7
Lalb_Chr08g0241801 Lupinus albus HOM05D002463 ORTHO05D002669 7.8e-13 77.0 82 51.2
Nn1g05243 Nelumbo nucifera HOM05D002463 ORTHO05D002669 7.8e-13 77.0 83 50.6
CANSAT25G3572 Cannabis sativa HOM05D002463 ORTHO05D002669 1.3e-12 76.3 83 49.4
Gohir.A05G230500 Gossypium hirsutum HOM05D002463 ORTHO05D002669 1.3e-12 76.3 82 51.2
Nitab4.5_0001915g0130 Nicotiana tabacum HOM05D002463 ORTHO05D002669 1.3e-12 76.3 83 51.8
TWI56G1298 Tripterygium wilfordii HOM05D002463 ORTHO05D002669 1.3e-12 76.3 82 51.2
Hma1.2p1_0853F.1_g228760 Hydrangea macrophylla HOM05D002463 ORTHO05D002669 1.7e-12 75.9 44 81.8
Prupe.1G508800 Prunus persica HOM05D002463 ORTHO05D002669 1.7e-12 75.9 83 50.6
QL12p035606 Quercus lobata HOM05D002463 ORTHO05D002669 1.7e-12 75.9 82 52.4
Dinv44726 Davidia involucrata HOM05D002463 ORTHO05D002669 2.3e-12 75.5 83 51.8
Duzib041G0327 Durio zibethinus HOM05D002463 ORTHO05D002669 2.3e-12 75.5 82 48.8
GSVIVG01008966001 Vitis vinifera HOM05D002463 ORTHO05D002669 3.0e-12 75.1 82 52.4
CiPaw.05G231600 Carya illinoinensis HOM05D002463 ORTHO05D002669 3.9e-12 74.7 82 50.0
Eucgr.F04387 Eucalyptus grandis HOM05D002463 ORTHO05D002669 5.1e-12 74.3 43 79.1
Haze_00553 Corylus avellana HOM05D002463 ORTHO05D002669 6.6e-12 73.9 83 48.2
MD15G1361400 Malus domestica HOM05D002463 ORTHO05D002669 8.7e-12 73.6 83 49.4
Psat2g076480 Pisum sativum HOM05D002463 ORTHO05D002669 8.7e-12 73.6 82 50.0
TAR625G0674 Trochodendron aralioides HOM05D002463 ORTHO05D002669 8.7e-12 73.6 83 48.2
Hma1.2p1_0276F.1_g111360 Hydrangea macrophylla HOM05D002463 ORTHO05D002669 1.1e-11 73.2 83 51.8
PGR044G2535 Punica granatum HOM05D002463 ORTHO05D002669 1.1e-11 73.2 82 48.8
TPR.G30416 Trifolium pratense HOM05D002463 ORTHO05D002669 1.1e-11 73.2 43 79.1
arahy.Tifrunner.gnm1.ann1.JL876H Arachis hypogaea HOM05D002463 ORTHO05D002669 1.5e-11 72.8 82 48.8
Cfa015939 Carpinus fangiana HOM05D002463 ORTHO05D002669 1.5e-11 72.8 83 47.0
MBI05_g36574_MAGBIO Magnolia biondii HOM05D002463 ORTHO05D002669 1.9e-11 72.4 83 47.0
PSO675G1410 Papaver somniferum HOM05D002463 ORTHO05D002669 1.9e-11 72.4 82 47.6
Ciclev10000226m.g Citrus clementina HOM05D002463 ORTHO05D002669 2.5e-11 72.0 82 50.0
Lalb_Chr10g0102101 Lupinus albus HOM05D002463 ORTHO05D002669 4.3e-11 71.2 82 47.6
Medtr5g061340 Medicago truncatula HOM05D002463 ORTHO05D002669 4.3e-11 71.2 43 76.7
TAR625G0929 Trochodendron aralioides HOM05D002463 ORTHO05D002669 4.3e-11 71.2 83 47.0
Atru.chr13.1291 Acer truncatum HOM05D002463 ORTHO05D002669 5.6e-11 70.9 82 50.0
Nn5g28977 Nelumbo nucifera HOM05D002463 ORTHO05D002669 5.6e-11 70.9 83 45.8
Oeu061467.1 Olea europaea HOM05D002463 ORTHO05D002669 5.6e-11 70.9 44 77.3
arahy.Tifrunner.gnm1.ann1.A3XBSF Arachis hypogaea HOM05D002463 ORTHO05D002669 1.3e-10 69.7 82 47.6
Cpa.g.sc49.109 Carica papaya HOM05D002463 ORTHO05D002669 1.3e-10 69.7 82 48.8
Lj4A109T46 Lonicera japonica HOM05D002463 ORTHO05D002669 1.3e-10 69.7 44 77.3
Sed0021130 Sechium edule HOM05D002463 ORTHO05D002669 1.3e-10 69.7 43 72.1
ClCG11G008000 Citrullus lanatus HOM05D002463 ORTHO05D002669 1.6e-10 69.3 43 72.1
MD08G1174700 Malus domestica HOM05D002463 ORTHO05D002669 1.6e-10 69.3 83 48.2
Manes.18G071400 Manihot esculenta HOM05D002463 ORTHO05D002669 1.6e-10 69.3 43 76.7
VMungo0647G1531 Vigna mungo HOM05D002463 ORTHO05D002669 1.6e-10 69.3 82 46.3
Cc10_g05980 Coffea canephora HOM05D002463 ORTHO05D002669 2.1e-10 68.9 83 47.0
Phvul.009G027000 Phaseolus vulgaris HOM05D002463 ORTHO05D002669 2.1e-10 68.9 83 47.0
Aqoxy6G00519 Aquilegia oxysepala HOM05D002463 ORTHO05D002669 2.8e-10 68.6 44 68.2
MELO3C008134.2 Cucumis melo HOM05D002463 ORTHO05D002669 2.8e-10 68.6 43 72.1
FAN04G0975 Fragaria x ananassa HOM05D002463 ORTHO05D002669 2.8e-10 68.6 83 45.8
FAN08G3626 Fragaria x ananassa HOM05D002463 ORTHO05D002669 2.8e-10 68.6 83 45.8
FAN13G0548 Fragaria x ananassa HOM05D002463 ORTHO05D002669 2.8e-10 68.6 83 45.8
Sabra02G0072000 Salix brachista HOM05D002463 ORTHO05D002669 2.8e-10 68.6 82 47.6
CsaV3_2G033620 Cucumis sativus L. HOM05D002463 ORTHO05D002669 3.6e-10 68.2 43 69.8
MSTRG.952 Avicennia marina HOM05D002463 ORTHO05D002669 6.2e-10 67.4 64 53.1
PSO541G0852 Papaver somniferum HOM05D002463 ORTHO05D002669 6.2e-10 67.4 63 52.4
RcHm_v2.0_Chr7g0240291 Rosa chinensis HOM05D002463 ORTHO05D002669 6.2e-10 67.4 83 45.8
A09p30160 Brassica napus HOM05D002463 ORTHO05D002669 8.1e-10 67.0 82 46.3
Phvul.008G169300 Phaseolus vulgaris HOM05D002463 ORTHO05D002669 8.1e-10 67.0 43 69.8
Potri.002G091200 Populus trichocarpa HOM05D002463 ORTHO05D002669 8.1e-10 67.0 82 46.3
FAN18G2956 Fragaria x ananassa HOM05D002463 ORTHO05D002669 1.1e-09 66.6 83 44.6
SalBow7G3787 Salvia bowleyana HOM05D002463 ORTHO05D002669 1.1e-09 66.6 83 45.8
BcaB01g01356 Brassica carinata HOM05D002463 ORTHO05D002669 1.4e-09 66.2 83 44.6
Lj1g0024078 Lotus japonicus HOM05D002463 ORTHO05D002669 1.4e-09 66.2 43 69.8
Os06g0224200 Oryza sativa ssp. japonica HOM05D002463 ORTHO05D002669 1.4e-09 66.2 83 43.4
Sp6g09270 Schrenkiella parvula HOM05D002463 ORTHO05D002669 1.4e-09 66.2 82 45.1
BraA09t38580Z Brassica rapa HOM05D002463 ORTHO05D002669 1.8e-09 65.9 82 45.1
FvH4_5g38290 Fragaria vesca HOM05D002463 ORTHO05D002669 3.1e-09 65.1 83 44.6
TPR.G28953 Trifolium pratense HOM05D002463 ORTHO05D002669 3.1e-09 65.1 43 69.8
Aa31LG9G14470 Aethionema arabicum HOM05D002463 ORTHO05D002669 5.3e-09 64.3 81 44.4
AL6G42360 Arabidopsis lyrata HOM05D002463 ORTHO05D002669 5.3e-09 64.3 82 43.9
AT4G08550 Arabidopsis thaliana HOM05D002463 ORTHO05D002669 5.3e-09 64.3 82 43.9
BcaC04g20914 Brassica carinata HOM05D002463 ORTHO05D002669 9.0e-09 63.5 43 67.4
C09p37980 Brassica napus HOM05D002463 ORTHO05D002669 9.0e-09 63.5 43 67.4
BolC9t56635H Brassica oleracea HOM05D002463 ORTHO05D002669 9.0e-09 63.5 43 67.4
Migut.N02917 Erythranthe guttata HOM05D002463 ORTHO05D002669 9.0e-09 63.5 44 68.2
Lalb_Chr11g0065571 Lupinus albus HOM05D002463 ORTHO05D002669 9.0e-09 63.5 44 68.2
Zm00001eb279490 Zea mays HOM05D002463 ORTHO05D002669 9.0e-09 63.5 44 65.9
ATR0564G367 Amborella trichopoda HOM05D002463 ORTHO05D002669 1.2e-08 63.2 85 42.4
arahy.Tifrunner.gnm1.ann1.8HX7TR Arachis hypogaea HOM05D002463 ORTHO05D002669 1.2e-08 63.2 44 65.9
arahy.Tifrunner.gnm1.ann1.DEE1GH Arachis hypogaea HOM05D002463 ORTHO05D002669 1.2e-08 63.2 44 65.9
CARHR259580 Cardamine hirsuta HOM05D002463 ORTHO05D002669 1.2e-08 63.2 82 42.7
Gohir.A01G186900 Gossypium hirsutum HOM05D002463 ORTHO05D002669 1.5e-08 62.8 82 43.9
Lj4A711G29 Lonicera japonica HOM05D002463 ORTHO05D002669 1.5e-08 62.8 83 45.8
HPP92_013080 Vanilla planifolia HOM05D002463 ORTHO05D002669 2.0e-08 62.4 83 42.2
VMungo1309G0594 Vigna mungo HOM05D002463 ORTHO05D002669 2.0e-08 62.4 42 69.0
Gohir.D01G182700 Gossypium hirsutum HOM05D002463 ORTHO05D002669 3.4e-08 61.6 42 66.7
Gorai.002G219700 Gossypium raimondii HOM05D002463 ORTHO05D002669 3.4e-08 61.6 42 66.7
Medtr3g073590 Medicago truncatula HOM05D002463 ORTHO05D002669 3.4e-08 61.6 42 66.7
Carub.0006s2709 Capsella rubella HOM05D002463 ORTHO05D002669 4.4e-08 61.2 82 42.7
Lsat_1_v5_gn_3_29021 Lactuca sativa HOM05D002463 ORTHO05D002669 4.4e-08 61.2 44 61.4
MSTRG.22133 Avicennia marina HOM05D002463 ORTHO05D002669 5.8e-08 60.8 44 65.9
Psat5g135920 Pisum sativum HOM05D002463 ORTHO05D002669 7.6e-08 60.5 42 69.0
ECA247G0741 Erigeron canadensis HOM05D002463 ORTHO05D002669 9.9e-08 60.1 44 63.6
Ca_26315_v3 Cicer arietinum L. HOM05D002463 ORTHO05D002669 2.2e-07 58.9 42 64.3
THA.LOC104806801 Tarenaya hassleriana HOM05D002463 ORTHO05D002669 2.2e-07 58.9 82 42.7
CDE08G1093 Ceratophyllum demersum HOM05D002463 ORTHO05D002669 3.8e-07 58.2 43 60.5
Glyma.06G107200 Glycine max HOM05D002463 ORTHO05D002669 6.4e-07 57.4 43 62.8
HanXRQChr04g0112921 Helianthus annuus HOM05D002463 ORTHO05D002669 8.4e-07 57.0 44 59.1


User provided reference genes

Program Settings