Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 2.8e-118 428.7 233 100.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.8e-81 305.8 235 71.1
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.4e-80 303.5 234 72.2
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 4.0e-80 302.0 239 74.1
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.2e-78 296.2 238 71.4
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 6.4e-78 294.7 239 74.1
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 7.1e-77 291.2 239 70.3
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 2.1e-76 289.7 238 72.7
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 6.0e-76 288.1 243 67.9
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 7.8e-76 287.7 247 67.6
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.7e-75 286.6 240 67.5
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 3.0e-75 285.8 237 70.9
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 3.0e-75 285.8 242 69.4
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 3.9e-75 285.4 247 68.4
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.9e-74 283.1 241 68.9
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.3e-74 282.3 242 68.6
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 3.3e-74 282.3 240 67.1
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 9.6e-74 280.8 241 68.0
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.1e-72 277.3 235 69.4
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 8.9e-72 274.2 240 67.9
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.2e-71 273.9 243 69.5
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.2e-71 273.9 241 67.6
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.2e-71 273.9 238 70.2
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 3.4e-71 272.3 243 65.8
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 7.6e-71 271.2 238 67.6
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 8.4e-70 267.7 240 65.4
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.1e-69 267.3 219 71.2
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 6.0e-68 261.5 239 66.5
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 2.3e-67 259.6 240 64.6
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 3.9e-67 258.8 241 65.1
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.9e-67 258.8 232 64.7
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 6.6e-67 258.1 245 64.1
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.1e-66 257.3 245 59.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-66 256.9 238 66.4
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-66 256.9 244 66.0
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.5e-66 256.1 241 61.4
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 9.6e-66 254.2 244 63.9
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.6e-65 253.4 239 63.2
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 3.6e-65 252.3 239 61.1
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 3.1e-64 249.2 226 65.5
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 5.3e-64 248.4 247 63.2
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.0e-63 246.5 244 64.3
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 4.5e-63 245.4 254 61.0
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 7.6e-63 244.6 257 60.3
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 2.2e-62 243.0 255 61.6
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.9e-62 242.7 251 61.0
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.1e-61 240.7 166 81.3
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.9e-61 240.0 240 59.2
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 2.4e-61 239.6 253 59.7
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 3.2e-61 239.2 270 58.9
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 9.3e-61 237.7 263 58.6
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 9.3e-61 237.7 239 63.2
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.6e-60 236.9 237 63.3
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 2.1e-60 236.5 240 60.4
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 8.7e-59 231.1 240 57.5
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.1e-58 230.7 238 55.5
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.1e-58 230.7 240 58.3
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.5e-58 230.3 231 63.6
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.9e-58 229.9 239 62.3
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.9e-58 229.9 232 59.5
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 2.5e-58 229.6 251 60.2
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 3.3e-58 229.2 260 58.8
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 4.3e-58 228.8 232 58.2
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 5.6e-58 228.4 236 59.3
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.3e-57 227.3 233 56.7
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 1.6e-57 226.9 285 55.8
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 6.2e-57 224.9 227 60.8
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.1e-56 224.2 197 69.5
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 5.3e-56 221.9 251 59.0
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.9e-56 221.5 236 58.9
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 1.2e-55 220.7 241 54.4
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.0e-55 219.9 268 55.2
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 3.4e-55 219.2 255 56.1
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 5.8e-55 218.4 253 57.3
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 9.9e-55 217.6 239 56.5
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 1.3e-54 217.2 262 56.1
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.7e-54 216.9 244 59.0
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 2.9e-54 216.1 253 56.9
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 4.2e-53 212.2 168 64.3
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 3.3e-50 202.6 231 58.0
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.8e-49 199.5 217 56.7
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 6.2e-49 198.4 237 50.2
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 6.2e-49 198.4 248 55.2
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.1e-48 197.6 231 49.8
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.2e-47 194.1 283 51.2
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 4.5e-47 192.2 239 54.4
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 1.3e-46 190.7 232 52.2
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 3.8e-46 189.1 226 51.8
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 8.4e-46 188.0 226 54.0
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 8.4e-46 188.0 226 54.0
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 1.9e-45 186.8 222 53.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 2.5e-45 186.4 238 52.5
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 2.5e-45 186.4 234 49.1
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 5.5e-45 185.3 226 53.1
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 5.5e-45 185.3 268 47.0
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 5.5e-45 185.3 231 54.1
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 1.2e-44 184.1 242 52.1
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.2e-44 184.1 259 49.8
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 4.6e-44 182.2 234 49.1
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.0e-43 181.0 240 51.2
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.8e-43 180.3 243 47.7
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 9.7e-42 174.5 206 59.2
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.3e-41 174.1 224 54.5
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.8e-41 172.9 239 49.4
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 8.2e-41 171.4 238 49.6
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 5.3e-40 168.7 237 50.2
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.9e-38 162.9 232 51.3
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 2.9e-38 162.9 278 43.2
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 6.5e-38 161.8 248 50.0
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.9e-37 160.2 239 45.6
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 3.2e-37 159.5 235 44.3
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.6e-36 157.1 155 54.2
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 4.6e-36 155.6 231 50.6
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 7.9e-36 154.8 260 46.2
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 1.3e-35 154.1 240 49.6
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-35 153.7 232 44.8
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 3.0e-35 152.9 234 44.4
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 3.9e-35 152.5 240 49.6
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 5.1e-35 152.1 171 53.2
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 8.7e-35 151.4 236 46.6
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.9e-34 150.2 264 45.1
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.9e-34 150.2 264 45.1
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.3e-33 147.5 248 45.6
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 1.7e-33 147.1 266 44.4
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-33 147.1 266 44.4
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.1e-32 142.5 278 44.6
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 2.0e-31 140.2 278 43.5
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 4.5e-31 139.0 148 56.1
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 5.0e-30 135.6 251 43.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 8.5e-30 134.8 191 53.4
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 6.1e-28 128.6 245 42.9
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 7.9e-28 128.3 256 42.2
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.0e-27 126.3 274 41.6
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 7.4e-26 121.7 155 47.1
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 2.8e-25 119.8 269 40.9
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 8.5e-22 108.2 110 55.5
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 4.2e-21 105.9 240 36.2
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 1.2e-20 104.4 239 36.8
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.6e-20 104.0 155 43.9
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-18 97.4 108 53.7
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 3.7e-17 92.8 83 75.9
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 4.2e-13 79.3 150 39.3
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 4.4e-10 69.3 130 38.5
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.3e-09 67.8 129 39.5
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 1.7e-09 67.4 149 34.2
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 2.2e-09 67.0 152 36.8
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 2.2e-09 67.0 130 38.5
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 1.1e-08 64.7 149 34.9
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 1.1e-08 64.7 132 36.4
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 1.8e-08 63.9 149 33.6
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 9.1e-08 61.6 137 36.5
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 1.2e-07 61.2 134 38.1
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 1.2e-07 61.2 130 35.4
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.6e-07 60.8 136 33.8
Peaxi162Scf00450g00733 Petunia axillaris HOM05D002458 ORTHO05D002603 1.6e-07 60.8 130 34.6
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 2.0e-07 60.5 144 34.7
PSO675G2615 Papaver somniferum HOM05D002458 ORTHO05D002603 2.7e-07 60.1 138 34.1
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 5.9e-07 58.9 134 34.3
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 7.7e-07 58.5 135 37.8
PSO541G0955 Papaver somniferum HOM05D002458 ORTHO05D002603 1.0e-06 58.2 138 33.3
GSVIVG01022142001 Vitis vinifera HOM05D002458 ORTHO05D002603 1.0e-06 58.2 151 34.4
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 1.3e-06 57.8 130 35.4
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.7e-06 57.4 51 58.8
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 2.2e-06 57.0 137 35.8
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 2.2e-06 57.0 130 34.6
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 2.2e-06 57.0 149 30.2
Sabra07G0037800 Salix brachista HOM05D002458 ORTHO05D002603 2.2e-06 57.0 150 33.3
Peaxi162Scf00232g01110 Petunia axillaris HOM05D003370 ORTHO05D003848 2.9e-06 56.6 152 29.6
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 5.0e-06 55.8 130 36.2
THA.LOC104819222 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 5.0e-06 55.8 97 42.3
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 6.5e-06 55.5 130 33.8
Lj2g0015041 Lotus japonicus HOM05D002458 ORTHO05D002603 8.5e-06 55.1 130 36.2


User provided reference genes

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