Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 2.4e-268 928.3 497 100.0
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 9.7e-209 730.3 426 94.6
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 8.6e-72 275.4 606 39.3
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.7e-67 261.2 576 40.6
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.8e-66 257.7 638 39.0
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 6.4e-43 179.5 564 35.8
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 7.8e-41 172.6 531 36.2
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 5.1e-40 169.9 535 33.5
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 2.5e-39 167.5 609 32.2
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 7.3e-39 166.0 601 31.4
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.6e-38 164.9 542 34.5
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 4.7e-38 163.3 574 32.6
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 1.1e-37 162.2 531 34.5
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.8e-37 161.4 602 32.6
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 3.1e-37 160.6 509 32.4
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 4.0e-37 160.2 545 33.8
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 4.0e-37 160.2 612 32.2
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 3.4e-36 157.1 632 29.9
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 9.9e-36 155.6 515 33.0
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 1.3e-35 155.2 589 32.1
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 2.9e-35 154.1 516 33.9
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 8.4e-35 152.5 522 33.7
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.9e-34 151.4 520 32.9
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.2e-33 148.7 73 100.0
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 1.6e-33 148.3 487 33.3
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 2.1e-33 147.9 584 29.8
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 5.1e-32 143.3 602 32.1
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.5e-31 141.7 522 32.4
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 2.1e-30 137.9 618 29.6
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 3.6e-30 137.1 535 31.4
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 3.6e-30 137.1 588 27.9
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 3.6e-30 137.1 618 30.4
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 1.2e-28 132.1 619 31.5
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 4.9e-27 126.7 502 30.3
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 4.9e-27 126.7 506 27.9
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.1e-26 125.6 538 30.7
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 1.9e-26 124.8 615 26.5
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 7.1e-26 122.9 671 26.5
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 1.2e-25 122.1 566 30.2
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 2.7e-25 120.9 544 27.4
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 5.1e-24 116.7 663 27.3
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 2.5e-23 114.4 490 27.8
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 4.3e-23 113.6 666 26.7
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 3.7e-22 110.5 594 27.3
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 3.7e-22 110.5 626 27.6
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 6.2e-22 109.8 674 26.9
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.4e-21 108.6 669 26.9
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 3.1e-21 107.5 165 44.8
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 6.9e-21 106.3 484 29.8
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 9.0e-21 105.9 563 27.2
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.2e-20 105.5 490 28.6
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 2.6e-20 104.4 701 24.4
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 5.8e-20 103.2 370 31.9
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 5.8e-20 103.2 619 25.5
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 9.9e-20 102.4 511 29.4
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 9.9e-20 102.4 600 27.8
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 4.9e-19 100.1 164 45.1
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 1.1e-18 99.0 513 31.0
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 2.4e-18 97.8 71 71.8
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.2e-18 97.4 145 44.1
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 4.2e-18 97.1 312 33.7
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 4.2e-18 97.1 95 56.8
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.7e-17 94.4 478 24.1
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 6.0e-17 93.2 464 29.3
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 7.9e-17 92.8 593 24.8
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 7.9e-17 92.8 510 25.9
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 1.0e-16 92.4 470 29.4
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 1.3e-16 92.0 169 42.6
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 8.7e-16 89.4 77 61.0
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 8.7e-16 89.4 122 44.3
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 1.1e-15 89.0 72 63.9
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 1.5e-15 88.6 608 25.5
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 1.5e-15 88.6 500 27.0
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 1.5e-15 88.6 602 28.9
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 9.6e-15 85.9 469 25.8
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.3e-14 85.5 477 26.6
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 1.6e-14 85.1 372 30.4
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 2.1e-14 84.7 469 24.3
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 2.1e-14 84.7 511 28.4
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 3.7e-14 84.0 469 24.3
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.8e-13 81.6 472 28.6
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 1.8e-13 81.6 357 28.3
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 5.3e-13 80.1 479 24.2
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 9.0e-13 79.3 75 53.3
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.6e-12 77.8 422 26.5
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 4.5e-12 77.0 422 28.0
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 7.6e-12 76.3 446 28.9
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 1.0e-11 75.9 154 35.1
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.0e-11 75.9 177 32.8
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 1.0e-11 75.9 72 51.4
SEGI_35581 Sequoiadendron giganteum HOM05D007504 ORTHO05D007629 2.9e-11 74.3 69 53.6
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.1e-10 72.4 479 24.6
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 1.4e-10 72.0 87 44.8
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.4e-10 72.0 399 29.3
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 2.5e-10 71.2 471 24.0
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 2.5e-10 71.2 246 32.1
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 9.3e-10 69.3 152 34.2
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 9.3e-10 69.3 92 41.3
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.2e-09 68.9 475 26.9
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 2.1e-09 68.2 468 22.2
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 3.5e-09 67.4 468 24.8
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 7.9e-09 66.2 467 22.5
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 1.8e-08 65.1 206 32.0
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.8e-08 65.1 467 22.3
Nn1g08319 Nelumbo nucifera HOM05D007504 ORTHO05D007629 1.8e-08 65.1 41 70.7
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.8e-08 65.1 231 29.0
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 2.3e-08 64.7 468 22.2
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.0e-08 64.3 244 27.5
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 3.9e-08 63.9 468 22.4
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 3.9e-08 63.9 310 27.4
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 5.1e-08 63.5 209 27.8
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 8.7e-08 62.8 80 42.5
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 8.7e-08 62.8 472 22.5
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.9e-07 61.6 288 28.5
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 3.3e-07 60.8 467 21.8
ATR0609G018 Amborella trichopoda HOM05D007504 ORTHO05D007629 4.3e-07 60.5 204 30.4
Haze_03334 Corylus avellana HOM05D007504 ORTHO05D007629 5.7e-07 60.1 97 46.4
Glyma.10G170100 Glycine max HOM05D007504 ORTHO05D007629 9.7e-07 59.3 74 40.5
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 6.3e-06 56.6 81 37.0


User provided reference genes

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