Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023925 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.3e-197 693.3 490 100.0
CSS0042730 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 1.5e-113 414.1 260 83.1
Dinv44465 Davidia involucrata HOM05D007340 ORTHO05D008979 5.5e-79 299.3 252 62.7
Rhsim04G0212000 Rhododendron simsii HOM05D001150 ORTHO05D000998 2.8e-75 287.0 249 61.4
vmacro17996 Vaccinium macrocarpon HOM05D007340 ORTHO05D008979 8.7e-69 265.4 246 58.9
Hma1.2p1_0511F.1_g169170 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 1.6e-67 261.2 265 53.2
Hma1.2p1_2025F.1_g311460 Hydrangea macrophylla HOM05D007340 ORTHO05D008979 2.8e-67 260.4 268 53.0
CSS0002707 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 5.3e-66 256.1 558 59.0
CSS0037889 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 5.5e-63 246.1 133 91.0
Haze_00999 Corylus avellana HOM05D007340 ORTHO05D008979 3.1e-58 230.3 272 49.6
PGSC0003DMG400004352 Solanum tuberosum HOM05D007340 ORTHO05D008979 9.1e-58 228.8 273 48.0
Cc03_g02890 Coffea canephora HOM05D007340 ORTHO05D008979 1.2e-57 228.4 274 46.0
CAN.G522.11 Capsicum annuum HOM05D007340 ORTHO05D008979 2.6e-57 227.3 273 46.9
CSS0014652 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 3.4e-57 226.9 228 61.0
CiPaw.01G157600 Carya illinoinensis HOM05D007340 ORTHO05D008979 3.4e-57 226.9 271 49.4
Cfa015550 Carpinus fangiana HOM05D007340 ORTHO05D008979 1.7e-56 224.6 271 49.1
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.1e-55 221.9 270 45.2
Nitab4.5_0003070g0020 Nicotiana tabacum HOM05D007340 ORTHO05D008979 1.4e-55 221.5 263 47.5
Sopen01g032100 Solanum pennellii HOM05D007340 ORTHO05D008979 1.9e-55 221.1 273 46.9
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 2.5e-55 220.7 260 46.9
QL06p005970 Quercus lobata HOM05D007340 ORTHO05D008979 4.7e-54 216.5 267 47.6
Lj4P768T34 Lonicera japonica HOM05D007340 ORTHO05D008979 6.1e-54 216.1 253 48.6
Solyc01g080310.4 Solanum lycopersicum HOM05D007340 ORTHO05D008979 7.9e-54 215.7 273 47.3
Migut.G00250 Erythranthe guttata HOM05D007340 ORTHO05D008979 3.9e-53 213.4 285 45.6
MD02G1277500 Malus domestica HOM05D007340 ORTHO05D008979 4.4e-52 209.9 260 45.4
Sed0013632 Sechium edule HOM05D007340 ORTHO05D008979 5.7e-52 209.5 260 45.0
MELO3C006065.2 Cucumis melo HOM05D007340 ORTHO05D008979 7.4e-52 209.1 266 45.5
ClCG05G001120 Citrullus lanatus HOM05D007340 ORTHO05D008979 3.1e-50 203.8 256 45.3
CsaV3_3G008450 Cucumis sativus L. HOM05D007340 ORTHO05D008979 7.0e-50 202.6 266 45.5
Oeu021055.1 Olea europaea HOM05D007340 ORTHO05D008979 1.2e-49 201.8 267 43.4
Prupe.3G113000 Prunus persica HOM05D007340 ORTHO05D008979 1.2e-49 201.8 263 44.5
TWI73G0639 Tripterygium wilfordii HOM05D007340 ORTHO05D008979 2.0e-49 201.1 264 45.1
Thecc.04G270900 Theobroma cacao HOM05D007340 ORTHO05D008979 7.7e-49 199.1 274 44.5
Duzib151G0496 Durio zibethinus HOM05D007340 ORTHO05D008979 1.3e-48 198.4 275 43.6
TAR633G1855 Trochodendron aralioides HOM05D007340 ORTHO05D008979 1.3e-48 198.4 240 46.7
Cpa.g.sc16.57 Carica papaya HOM05D007340 ORTHO05D008979 3.8e-48 196.8 273 45.4
Gorai.006G074200 Gossypium raimondii HOM05D001150 ORTHO05D008979 2.5e-47 194.1 264 41.7
Atru.chr4.2678 Acer truncatum HOM05D007340 ORTHO05D008979 5.5e-47 193.0 262 42.4
Atru.chr4.2685 Acer truncatum HOM05D007340 ORTHO05D008979 5.5e-47 193.0 262 42.4
Gohir.D09G059500 Gossypium hirsutum HOM05D001150 ORTHO05D008979 2.1e-46 191.0 264 41.7
Ciclev10007051m.g Citrus clementina HOM05D007340 ORTHO05D008979 4.0e-45 186.8 203 47.8
Gohir.A09G060400 Gossypium hirsutum HOM05D001150 ORTHO05D008979 4.0e-45 186.8 264 41.3
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 2.6e-44 184.1 219 43.8
arahy.Tifrunner.gnm1.ann1.PE1C4R Arachis hypogaea HOM05D007340 ORTHO05D008979 1.7e-43 181.4 252 41.3
COL.COLO4_13983 Corchorus olitorius HOM05D007340 ORTHO05D008979 6.3e-43 179.5 259 41.7
FAN12G4271 Fragaria x ananassa HOM05D007340 ORTHO05D008979 8.2e-43 179.1 239 43.1
FvH4_4g14110 Fragaria vesca HOM05D007340 ORTHO05D008979 1.8e-42 177.9 239 42.7
Lalb_Chr15g0087231 Lupinus albus HOM05D007340 ORTHO05D008979 5.3e-42 176.4 252 40.9
EL10Ac8g18451 Beta vulgaris HOM05D007340 ORTHO05D008979 9.1e-42 175.6 241 40.7
Sc19g0004680 Simmondsia chinensis HOM05D007340 ORTHO05D008979 1.6e-41 174.9 247 45.3
Manes.03G186900 Manihot esculenta HOM05D007340 ORTHO05D008979 2.0e-41 174.5 242 40.9
RcHm_v2.0_Chr4g0419121 Rosa chinensis HOM05D007340 ORTHO05D008979 7.7e-41 172.6 240 41.2
CANSAT78G0497 Cannabis sativa HOM05D007340 ORTHO05D008979 1.7e-40 171.4 222 43.2
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.1e-39 168.7 254 38.6
AUR62010965 Chenopodium quinoa HOM05D007340 ORTHO05D008979 3.6e-38 163.7 223 40.8
SalBow2G1987 Salvia bowleyana HOM05D007340 ORTHO05D008979 3.6e-38 163.7 207 42.0
PGR065G0011 Punica granatum HOM05D007340 ORTHO05D008979 1.4e-37 161.8 212 42.5
Medtr5g094770 Medicago truncatula HOM05D007340 ORTHO05D008979 5.2e-37 159.8 221 41.2
SHI00355 Sapria himalayana HOM05D007340 ORTHO05D008979 5.2e-37 159.8 277 36.1
GSVIVG01017865001 Vitis vinifera HOM05D007340 ORTHO05D008979 5.2e-37 159.8 207 46.9
Carub.0006s1725 Capsella rubella HOM05D007340 ORTHO05D008979 6.8e-37 159.5 242 39.7
Phvul.003G036500 Phaseolus vulgaris HOM05D007340 ORTHO05D008979 6.8e-37 159.5 206 41.3
Eucgr.C03952 Eucalyptus grandis HOM05D007340 ORTHO05D008979 1.3e-35 155.2 259 38.6
AUR62021475 Chenopodium quinoa HOM05D007340 ORTHO05D008979 1.7e-35 154.8 203 41.9
Eucgr.C04132 Eucalyptus grandis HOM05D007340 ORTHO05D008979 2.2e-35 154.5 258 38.4
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 8.3e-35 152.5 256 36.7
Lsat_1_v5_gn_5_93381 Lactuca sativa HOM05D007340 ORTHO05D008979 1.4e-34 151.8 208 40.4
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 1.8e-34 151.4 255 35.7
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 1.2e-33 148.7 262 35.1
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 1.6e-33 148.3 255 35.3
AT5G18950 Arabidopsis thaliana HOM05D007340 ORTHO05D008979 2.0e-33 147.9 256 36.3
A10p20720 Brassica napus HOM05D007340 ORTHO05D008979 2.0e-33 147.9 257 35.0
BraA10t44135Z Brassica rapa HOM05D007340 ORTHO05D008979 2.7e-33 147.5 252 34.5
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 2.7e-33 147.5 213 39.9
Sp6g25440 Schrenkiella parvula HOM05D007340 ORTHO05D008979 3.5e-33 147.1 252 35.7
HanXRQChr17g0539051 Helianthus annuus HOM05D007340 ORTHO05D008979 4.5e-33 146.7 207 40.1
THA.LOC104827130 Tarenaya hassleriana HOM05D007340 ORTHO05D008979 1.0e-32 145.6 264 36.4
BcaC04g18636 Brassica carinata HOM05D007340 ORTHO05D008979 3.8e-32 143.7 254 34.6
BcaB08g36633 Brassica carinata HOM05D007340 ORTHO05D008979 6.5e-32 142.9 221 36.7
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 8.5e-32 142.5 256 36.7
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 1.1e-31 142.1 211 37.4
DCAR_030586 Daucus carota HOM05D007340 ORTHO05D008979 2.5e-31 141.0 156 49.4
Lsat_1_v5_gn_8_10680 Lactuca sativa HOM05D007340 ORTHO05D008979 1.6e-30 138.3 124 50.8
Glyma.07G161500 Glycine max HOM05D007340 ORTHO05D008979 2.7e-30 137.5 259 35.9
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 1.4e-29 135.2 255 35.3
HanXRQChr10g0314401 Helianthus annuus HOM05D007340 ORTHO05D008979 1.4e-26 125.2 206 36.4
FAN17G2541 Fragaria x ananassa HOM05D007340 ORTHO05D008979 5.9e-25 119.8 212 36.3
Gohir.D08G046350 Gossypium hirsutum HOM05D007340 ORTHO05D008979 5.6e-23 113.2 102 52.0
Gorai.004G045600 Gossypium raimondii HOM05D007340 ORTHO05D008979 5.6e-23 113.2 102 52.0
TPR.G28181 Trifolium pratense HOM05D007340 ORTHO05D008979 7.3e-23 112.8 167 38.3
CSS0037045 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 4.0e-21 107.1 58 87.9
VMungo1215G3235 Vigna mungo HOM05D007340 ORTHO05D008979 1.2e-20 105.5 201 33.3
TPR.G14140 Trifolium pratense HOM05D007340 ORTHO05D008979 7.5e-20 102.8 160 37.5
CSS0022359 Camellia sinensis var. sinensis HOM05D007340 ORTHO05D008979 9.8e-20 102.4 58 86.2
TPR.G15743 Trifolium pratense HOM05D007340 ORTHO05D008979 1.7e-19 101.7 239 28.5
Aqoxy1G00377 Aquilegia oxysepala HOM05D007340 ORTHO05D008979 1.6e-17 95.1 183 31.7
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 2.0e-17 94.7 89 48.3
Lsat_1_v5_gn_4_28380 Lactuca sativa HOM05D007340 ORTHO05D008979 3.5e-17 94.0 96 44.8
CDE04G1227 Ceratophyllum demersum HOM05D007340 ORTHO05D008979 2.8e-14 84.3 210 32.4
BcaB01g04883 Brassica carinata HOM05D007340 ORTHO05D008979 1.2e-12 79.0 219 28.3
TPR.G40710 Trifolium pratense HOM05D007340 ORTHO05D008979 2.6e-12 77.8 68 54.4
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 3.4e-12 77.4 155 29.7
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 3.7e-11 73.9 118 33.9
Prupe.1G570100 Prunus persica HOM05D007340 ORTHO05D008979 6.4e-11 73.2 87 47.1
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 1.9e-10 71.6 111 33.3
BcaB01g05283 Brassica carinata HOM05D007340 ORTHO05D008979 3.2e-10 70.9 149 30.2
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 5.4e-10 70.1 147 27.9
Ah.04g150870 Amaranthus hybridus HOM05D000591 ORTHO05D000579 9.2e-10 69.3 78 37.2
SEGI_22909 Sequoiadendron giganteum HOM05D007340 ORTHO05D008979 1.2e-09 68.9 100 38.0
arahy.Tifrunner.gnm1.ann1.H4NKJU Arachis hypogaea HOM05D000104 ORTHO05D009920 2.0e-09 68.2 207 23.7
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 2.0e-09 68.2 206 25.2
TAR629G2305 Trochodendron aralioides HOM05D000104 ORTHO05D009920 2.7e-09 67.8 230 25.2
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 4.6e-09 67.0 210 24.3
arahy.Tifrunner.gnm1.ann1.JWX42Q Arachis hypogaea HOM05D000104 ORTHO05D009920 6.0e-09 66.6 207 23.7
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 7.8e-09 66.2 209 23.4
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 7.8e-09 66.2 105 32.4
arahy.Tifrunner.gnm1.ann1.UTK222 Arachis hypogaea HOM05D000104 ORTHO05D009920 1.0e-08 65.9 209 23.4
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 1.0e-08 65.9 110 30.9
CSS0032654 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 1.3e-08 65.5 108 33.3
Lj6C200G4 Lonicera japonica HOM05D006556 ORTHO05D008146 1.3e-08 65.5 157 28.7
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 2.3e-08 64.7 112 29.5
CSS0048316 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 2.3e-08 64.7 108 33.3
Glyma.12G191600 Glycine max HOM05D000104 ORTHO05D009920 3.0e-08 64.3 170 26.5
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 5.0e-08 63.5 112 30.4
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 6.6e-08 63.2 120 31.7
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 6.6e-08 63.2 120 31.7
AUR62016660 Chenopodium quinoa HOM05D007083 ORTHO05D008801 6.6e-08 63.2 176 24.4
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 8.6e-08 62.8 114 27.2
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 8.6e-08 62.8 114 27.2
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 8.6e-08 62.8 114 27.2
Lj4g0000542 Lotus japonicus HOM05D002890 ORTHO05D009847 1.1e-07 62.4 112 30.4
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 1.1e-07 62.4 208 24.0
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 1.5e-07 62.0 245 22.9
MD07G1059400 Malus domestica HOM05D002890 ORTHO05D009847 1.9e-07 61.6 112 31.2
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 1.9e-07 61.6 108 27.8
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 2.5e-07 61.2 139 27.3
Lj1g0020796 Lotus japonicus HOM05D000104 ORTHO05D009920 3.3e-07 60.8 219 22.4
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 5.6e-07 60.1 112 29.5
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 9.5e-07 59.3 110 29.1
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 9.5e-07 59.3 122 27.9
Cc09_g01660 Coffea canephora HOM05D002890 ORTHO05D009847 9.5e-07 59.3 111 27.0
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 9.5e-07 59.3 102 28.4
Actinidia21102 Actinidia chinensis HOM05D007202 ORTHO05D009125 1.2e-06 58.9 108 32.4
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 1.2e-06 58.9 110 30.0
AUR62011398 Chenopodium quinoa HOM05D007083 ORTHO05D008801 1.2e-06 58.9 142 24.6
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 1.6e-06 58.5 108 28.7
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 1.6e-06 58.5 108 29.6
RcHm_v2.0_Chr4g0419111 Rosa chinensis HOM05D007340 ORTHO05D008979 1.6e-06 58.5 48 52.1
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 2.8e-06 57.8 84 32.1
CAN.G113.7 Capsicum annuum HOM05D007455 ORTHO05D009431 3.6e-06 57.4 84 32.1
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.6e-06 57.4 137 23.4
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 3.6e-06 57.4 137 23.4
PGSC0003DMG400001336 Solanum tuberosum HOM05D007455 ORTHO05D009431 3.6e-06 57.4 82 31.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 4.7e-06 57.0 102 28.4
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 4.7e-06 57.0 108 27.8
MBI14_g36173_MAGBIO Magnolia biondii HOM05D064329 ORTHO05D048554 4.7e-06 57.0 68 42.6
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 4.7e-06 57.0 108 26.9
Sc10g0006710 Simmondsia chinensis HOM05D007202 ORTHO05D009125 4.7e-06 57.0 109 27.5
TPR.G25953 Trifolium pratense HOM05D000104 ORTHO05D009920 4.7e-06 57.0 220 22.7
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 6.2e-06 56.6 123 27.6
Ah.03g147890 Amaranthus hybridus HOM05D007202 ORTHO05D009125 6.2e-06 56.6 108 31.5
EL10Ac9g22973 Beta vulgaris HOM05D007202 ORTHO05D009125 6.2e-06 56.6 108 31.5
Duzib132G0783 Durio zibethinus HOM05D007202 ORTHO05D009125 6.2e-06 56.6 108 27.8
Phvul.009G206300 Phaseolus vulgaris HOM05D000104 ORTHO05D009920 6.2e-06 56.6 170 25.9
Sc16g0008150 Simmondsia chinensis HOM05D007390 ORTHO05D009114 6.2e-06 56.6 94 30.9
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 8.1e-06 56.2 109 31.2
Sopen04g025650 Solanum pennellii HOM05D007455 ORTHO05D009431 8.1e-06 56.2 82 31.7


User provided reference genes

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