Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.2e-33 146.0 74 100.0
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 5.8e-33 143.7 74 98.6
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 5.1e-29 130.6 74 89.2
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 8.7e-29 129.8 74 89.2
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 8.7e-29 129.8 73 89.0
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.1e-28 129.4 74 87.8
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.5e-28 129.0 74 86.5
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.9e-28 128.6 72 88.9
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-28 128.6 74 86.5
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-28 128.6 74 86.5
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 4.3e-28 127.5 72 87.5
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 7.3e-28 126.7 71 91.5
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.3e-27 125.9 74 85.1
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.6e-27 125.6 70 90.0
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 2.1e-27 125.2 74 86.5
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 3.6e-27 124.4 74 85.1
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 1.1e-26 122.9 74 85.1
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 4.0e-26 120.9 72 84.7
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.2e-25 119.4 74 78.4
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 3.4e-25 117.9 75 81.3
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.4e-25 117.5 72 81.9
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 5.8e-25 117.1 74 83.8
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 1.3e-24 115.9 74 83.8
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.2e-24 115.2 71 83.1
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.2e-24 115.2 71 80.3
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 6.4e-24 113.6 71 77.5
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 8.4e-24 113.2 67 86.6
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 8.4e-24 113.2 73 80.8
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.1e-23 112.8 71 81.7
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.1e-23 112.8 72 77.8
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.4e-23 112.5 72 77.8
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.4e-23 111.7 71 81.7
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 3.2e-23 111.3 70 78.6
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 3.2e-23 111.3 62 85.5
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 3.2e-23 111.3 62 90.3
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 3.2e-23 111.3 73 78.1
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 4.2e-23 110.9 62 85.5
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 4.2e-23 110.9 75 77.3
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 4.2e-23 110.9 71 78.9
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 5.4e-23 110.5 61 88.5
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 7.1e-23 110.2 72 77.8
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 9.3e-23 109.8 67 80.6
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 9.3e-23 109.8 70 78.6
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 9.3e-23 109.8 67 83.6
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 9.3e-23 109.8 75 76.0
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 9.3e-23 109.8 59 91.5
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 9.3e-23 109.8 62 85.5
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 9.3e-23 109.8 71 80.3
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.2e-22 109.4 63 82.5
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 1.2e-22 109.4 66 81.8
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.6e-22 109.0 69 82.6
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 1.6e-22 109.0 69 81.2
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 2.1e-22 108.6 66 80.3
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.1e-22 108.6 76 75.0
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 2.1e-22 108.6 75 74.7
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.7e-22 108.2 72 77.8
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 2.7e-22 108.2 64 82.8
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 3.5e-22 107.8 70 78.6
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 3.5e-22 107.8 66 84.8
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 3.5e-22 107.8 63 81.0
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 4.6e-22 107.5 66 80.3
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 4.6e-22 107.5 61 86.9
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 4.6e-22 107.5 63 84.1
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 4.6e-22 107.5 64 82.8
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 4.6e-22 107.5 66 81.8
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 4.6e-22 107.5 63 84.1
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 6.0e-22 107.1 73 76.7
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 7.8e-22 106.7 71 76.1
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.8e-22 106.7 74 73.0
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.0e-21 106.3 71 76.1
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.0e-21 106.3 66 78.8
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 1.0e-21 106.3 62 82.3
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.0e-21 106.3 71 76.1
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 1.3e-21 105.9 64 82.8
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.3e-21 105.9 62 85.5
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.7e-21 105.5 62 82.3
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 2.3e-21 105.1 71 74.6
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 2.3e-21 105.1 74 68.9
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 2.3e-21 105.1 74 73.0
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 3.0e-21 104.8 74 71.6
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 3.0e-21 104.8 71 76.1
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 3.9e-21 104.4 71 74.6
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 5.1e-21 104.0 68 76.5
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 6.6e-21 103.6 74 73.0
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 6.6e-21 103.6 71 73.2
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.1e-20 102.8 63 82.5
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.5e-20 102.4 63 81.0
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.5e-20 102.4 63 81.0
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.5e-20 102.4 69 78.3
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.5e-20 102.4 61 80.3
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.9e-20 102.1 69 78.3
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.9e-20 102.1 69 78.3
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 1.9e-20 102.1 64 78.1
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 1.9e-20 102.1 73 72.6
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.9e-20 102.1 74 73.0
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 1.9e-20 102.1 68 75.0
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 3.3e-20 101.3 59 88.1
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.3e-20 101.3 58 87.9
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.3e-20 101.3 58 87.9
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 4.3e-20 100.9 58 87.9
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 4.3e-20 100.9 68 72.1
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 5.6e-20 100.5 69 76.8
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 9.6e-20 99.8 72 73.6
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 9.6e-20 99.8 58 86.2
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 9.6e-20 99.8 64 78.1
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.6e-19 99.0 58 86.2
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 1.6e-19 99.0 58 84.5
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 1.6e-19 99.0 65 80.0
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 2.8e-19 98.2 64 76.6
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.8e-19 98.2 64 76.6
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.8e-19 98.2 64 76.6
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 67 70.1
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 4.8e-19 97.4 62 79.0
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 4.8e-19 97.4 62 79.0
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 4.8e-19 97.4 62 79.0
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 4.8e-19 97.4 58 82.8
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 6.2e-19 97.1 58 82.8
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 6.2e-19 97.1 67 73.1
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 8.1e-19 96.7 60 75.0
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 8.1e-19 96.7 54 88.9
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.1e-18 96.3 63 74.6
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.1e-18 96.3 63 74.6
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.1e-18 96.3 63 76.2
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 61 75.4
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 62 72.6
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.4e-18 95.9 64 75.0
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.8e-18 95.5 65 73.8
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 1.8e-18 95.5 55 83.6
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 2.4e-18 95.1 67 71.6
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.4e-18 95.1 58 75.9
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.4e-18 95.1 64 75.0
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 4.0e-18 94.4 67 68.7
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 9.9e-17 89.7 56 80.4
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 6.4e-16 87.0 57 71.9
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 4.2e-15 84.3 54 75.9
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 7.1e-15 83.6 60 71.7
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 4.6e-14 80.9 68 60.3
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 4.6e-14 80.9 71 59.2
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 4.6e-14 80.9 68 60.3
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 1.8e-13 79.0 68 60.3
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 2.3e-13 78.6 56 71.4
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.3e-13 78.6 56 71.4
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 5.1e-13 77.4 58 62.1
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 5.1e-13 77.4 58 67.2
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 5.1e-13 77.4 58 63.8
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 6.7e-13 77.0 44 84.1
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 8.7e-13 76.6 40 92.5
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 4.3e-12 74.3 50 70.0
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 7.4e-12 73.6 58 58.6
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 7.4e-12 73.6 56 67.9
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.3e-11 72.8 51 72.5
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.6e-11 72.4 70 48.6
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.1e-10 69.7 58 56.9
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.8e-10 68.9 58 56.9
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 4.0e-10 67.8 34 94.1
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 4.2e-07 57.8 57 47.4
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 1.2e-06 56.2 35 80.0
Gohir.A12G267900 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.9e-06 53.5 26 96.2


User provided reference genes

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