Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.4e-43 178.3 85 100.0
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.2e-42 176.0 85 98.8
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.5e-18 94.7 47 93.6
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.7e-12 75.9 50 74.0
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 5.0e-12 74.3 50 72.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 5.0e-12 74.3 60 53.3
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 6.5e-12 73.9 49 73.5
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.9e-11 72.4 49 71.4
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.1e-10 68.9 50 68.0
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.8e-09 65.9 42 69.0
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 3.0e-09 65.1 45 64.4
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 3.0e-09 65.1 44 63.6
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.0e-09 65.1 44 65.9
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 3.0e-09 65.1 44 65.9
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 5.1e-09 64.3 44 61.4
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 5.1e-09 64.3 44 65.9
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 6.7e-09 63.9 43 65.1
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 6.7e-09 63.9 82 42.7
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 6.7e-09 63.9 50 64.0
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.1e-08 63.2 44 63.6
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 1.1e-08 63.2 42 59.5
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.5e-08 62.8 40 70.0
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.5e-08 62.8 43 60.5
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.5e-08 62.8 43 60.5
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.5e-08 62.8 43 60.5
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.9e-08 62.4 44 59.1
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.9e-08 62.4 40 65.0
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 2.5e-08 62.0 45 57.8
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.3e-08 61.6 44 59.1
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 3.3e-08 61.6 43 58.1
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.3e-08 61.6 44 63.6
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 4.3e-08 61.2 42 59.5
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 4.3e-08 61.2 44 61.4
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 5.7e-08 60.8 61 45.9
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 5.7e-08 60.8 48 60.4
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 5.7e-08 60.8 45 62.2
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.4e-08 60.5 42 57.1
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 7.4e-08 60.5 42 57.1
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 9.7e-08 60.1 45 55.6
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 9.7e-08 60.1 40 60.0
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.3e-07 59.7 84 42.9
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.3e-07 59.7 42 59.5
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 1.3e-07 59.7 44 61.4
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.7e-07 59.3 44 61.4
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 1.7e-07 59.3 54 48.1
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.7e-07 59.3 44 59.1
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.2e-07 58.9 40 62.5
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.8e-07 58.5 42 54.8
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 2.8e-07 58.5 39 64.1
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.8e-07 58.5 37 67.6
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 3.7e-07 58.2 47 61.7
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 8.2e-07 57.0 38 68.4
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 8.2e-07 57.0 48 60.4
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-06 56.6 39 61.5
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-06 56.6 39 61.5
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-06 56.6 39 61.5
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-06 56.6 39 61.5
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 1.1e-06 56.6 44 56.8
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 1.8e-06 55.8 54 46.3
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.8e-06 55.8 44 59.1
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 2.4e-06 55.5 39 64.1
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 2.4e-06 55.5 54 46.3
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.4e-06 55.5 54 46.3
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.4e-06 55.5 43 51.2
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 3.1e-06 55.1 50 50.0
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 3.1e-06 55.1 44 56.8
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.1e-06 55.1 46 56.5
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.1e-06 54.7 44 54.5
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.1e-06 54.7 44 54.5
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 5.3e-06 54.3 45 48.9
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 5.3e-06 54.3 64 46.9
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 6.9e-06 53.9 43 58.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 6.9e-06 53.9 44 54.5
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 6.9e-06 53.9 43 51.2
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 9.1e-06 53.5 48 54.2
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 9.1e-06 53.5 78 37.2
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 9.1e-06 53.5 45 51.1
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 9.1e-06 53.5 37 64.9


User provided reference genes

Program Settings