Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 2152.9 1096 100.0
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 0.0e+00 1647.5 991 88.5
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1531.2 1223 69.5
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1409.8 1262 63.3
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1352.0 1274 61.1
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1322.4 1227 60.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1204.1 1265 54.9
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1191.0 1123 58.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1166.8 1098 58.6
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1144.0 1206 54.2
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1132.9 1248 52.2
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1120.9 1181 53.8
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1114.4 1246 52.2
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1112.8 1275 52.0
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1111.3 1109 56.1
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 0.0e+00 1091.3 1225 52.2
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1090.9 1073 56.5
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1087.8 1207 52.1
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 0.0e+00 1084.7 1109 55.1
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1083.9 1081 55.9
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 0.0e+00 1081.6 1346 49.1
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1081.6 1104 55.0
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 1075.5 1350 49.2
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 9.0e-311 1070.5 1270 49.1
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 3.4e-307 1058.5 1270 49.1
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 7.7e-307 1057.4 1144 54.1
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 1.9e-305 1052.7 1265 49.4
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 1.2e-304 1050.0 1244 50.4
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.1e-304 1049.3 932 61.5
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.0e-303 1047.0 1264 49.1
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.8e-303 1043.9 1179 52.0
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 8.8e-303 1043.9 1268 48.9
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 2.6e-302 1042.3 1263 50.0
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.8e-301 1038.1 1179 51.8
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 4.8e-301 1038.1 1088 54.2
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 1.5e-299 1033.1 1254 49.4
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 4.5e-299 1031.6 958 58.2
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.0e-298 1030.4 1186 51.4
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.3e-298 1030.0 1201 50.5
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 1.4e-297 1026.5 1229 49.3
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.9e-297 1026.2 1296 47.1
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 2.1e-296 1022.7 1099 52.4
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 1.8e-295 1019.6 1139 51.7
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 5.2e-295 1018.1 1229 49.4
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 8.8e-295 1017.3 1190 50.3
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 1.5e-294 1016.5 1306 46.6
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 9.7e-294 1013.8 1227 49.2
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.8e-292 1009.6 1132 52.8
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 2.4e-292 1009.2 1306 47.0
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 2.6e-291 1005.7 1216 49.5
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 4.5e-291 1005.0 1175 49.3
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.7e-291 1004.2 1067 53.7
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.3e-290 1003.4 1195 49.2
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 2.2e-290 1002.7 1161 51.0
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 2.1e-288 996.1 1159 49.7
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 6.1e-288 994.6 1229 49.1
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 6.1e-288 994.6 1280 47.3
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.0e-288 994.2 1084 53.0
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 1.0e-287 993.8 1174 49.5
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.8e-287 993.0 1120 51.0
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 4.0e-287 991.9 1250 48.5
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 5.2e-287 991.5 1164 50.0
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.6e-283 979.9 1150 49.7
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 1.7e-282 976.5 1253 46.8
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 2.9e-282 975.7 1150 49.6
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 5.0e-282 974.9 1305 46.1
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 8.0e-280 967.6 1187 47.5
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.4e-279 966.8 1193 47.9
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 8.8e-279 964.1 1117 50.7
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 1.2e-278 963.8 1192 47.9
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 5.4e-276 954.9 1197 47.0
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 5.9e-275 951.4 1220 48.3
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.8e-274 948.7 1229 47.7
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 5.0e-274 948.3 1188 47.1
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 2.5e-273 946.0 1210 47.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 2.5e-273 946.0 1188 46.7
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 2.5e-273 946.0 1137 48.7
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 3.2e-273 945.7 1187 46.7
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 5.5e-273 944.9 1094 51.0
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 7.2e-273 944.5 1188 46.5
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 1.0e-271 940.6 1111 50.3
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.8e-271 939.9 1189 46.5
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 1.2e-270 937.2 1189 46.4
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 1.2e-270 937.2 1189 46.4
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 4.4e-270 935.3 1213 47.8
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 2.8e-269 932.6 1377 44.5
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.4e-268 930.2 1168 47.3
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 3.3e-265 919.1 1188 46.3
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.9e-252 876.7 925 52.9
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 5.4e-252 875.2 1131 48.0
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 4.9e-245 852.0 1184 45.0
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.3e-234 817.4 1167 44.7
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 6.6e-226 788.5 1159 43.6
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 8.1e-224 781.6 1249 41.9
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 1.4e-223 780.8 1093 44.5
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.1e-223 779.6 1110 45.0
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 9.0e-215 751.5 1203 41.0
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 6.7e-210 735.3 971 45.9
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.9e-205 719.9 1158 41.7
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 3.5e-203 713.0 553 67.5
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.4e-199 701.0 899 46.1
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.5e-196 690.3 1176 38.6
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 2.2e-181 640.6 1210 37.6
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.7e-179 633.6 517 63.2
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.7e-173 614.4 525 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 6.1e-155 552.7 1021 34.8
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 4.9e-144 516.5 1071 34.0
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 7.6e-121 439.5 1179 28.9
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 3.4e-113 414.1 688 38.8
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 6.2e-107 393.3 706 39.1
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.3e-91 342.4 928 27.7
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.7e-84 316.2 244 66.8
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.3e-75 289.3 278 58.3
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.2e-56 225.3 173 67.1
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 8.3e-43 180.3 178 54.5
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 4.1e-42 177.9 131 73.3
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-38 166.4 268 38.8
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.7e-27 129.4 109 61.5
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 9.5e-23 113.6 586 24.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 2.8e-22 112.1 129 47.3
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.4e-21 109.8 105 51.4
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 1.2e-20 106.7 126 50.8
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.5e-20 106.3 92 59.8
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 3.4e-20 105.1 100 63.0
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 4.4e-20 104.8 237 32.5
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 8.3e-19 100.5 61 72.1
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.4e-18 99.0 383 29.2
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 2.1e-17 95.9 94 54.3
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 7.8e-17 94.0 72 59.7
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.6e-15 87.8 116 45.7
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 7.3e-15 87.4 94 50.0
Glyma.10G228400 Glycine max HOM05D005400 ORTHO05D006668 2.6e-12 79.0 206 32.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 2.9e-11 75.5 108 41.7
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.9e-10 72.8 120 40.8
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-09 70.1 125 41.6
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.9e-07 62.8 41 73.2


User provided reference genes

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