Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 0.0e+00 1215.7 643 100.0
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 7.7e-182 641.3 680 57.9
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.3e-165 587.4 643 54.9
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 5.5e-164 582.0 601 58.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.4e-161 572.8 671 55.1
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.6e-158 563.9 647 53.3
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 3.0e-154 549.7 665 50.2
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 4.6e-150 535.8 736 50.1
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.6e-147 526.2 742 46.8
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.0e-141 508.1 735 45.9
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 1.0e-141 508.1 696 47.4
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.3e-141 506.9 719 45.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 6.4e-136 488.8 678 47.1
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.4e-135 485.7 693 47.6
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 8.6e-133 478.4 663 46.0
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 8.6e-133 478.4 689 45.7
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.5e-132 476.9 680 46.3
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 5.6e-132 475.7 666 45.6
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.2e-131 474.6 682 46.9
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.1e-127 461.5 666 44.6
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.6e-126 456.1 668 43.9
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 5.6e-124 449.1 674 43.3
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 1.6e-123 447.6 667 44.1
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.1e-122 444.9 701 42.2
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.8e-122 444.1 687 43.2
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 3.4e-121 439.9 671 43.4
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 2.1e-118 430.6 728 44.9
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 6.6e-117 425.6 678 43.4
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 6.6e-117 425.6 679 44.3
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.1e-116 424.9 681 41.4
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.3e-116 422.9 708 41.5
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 9.6e-116 421.8 710 41.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 9.6e-116 421.8 662 43.7
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.6e-115 421.0 669 41.9
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 2.1e-115 420.6 666 45.6
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 6.2e-115 419.1 720 42.4
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.1e-114 418.3 738 40.7
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.4e-114 417.9 719 41.4
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 9.0e-114 415.2 720 42.6
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.1e-111 408.3 668 40.9
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.4e-111 407.9 687 40.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.2e-111 406.8 667 40.6
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.3e-109 400.6 674 40.4
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.9e-109 399.8 667 42.3
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.6e-108 395.2 673 39.5
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.8e-106 391.0 710 39.2
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.0e-105 387.5 695 40.0
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 8.4e-104 382.1 717 39.2
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.9e-103 380.9 726 39.9
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.9e-103 380.9 679 39.8
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 3.0e-101 373.6 669 40.5
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 6.7e-101 372.5 686 39.4
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.6e-99 367.9 713 40.1
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 2.8e-99 367.1 725 39.4
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 8.1e-99 365.5 677 39.0
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 4.0e-98 363.2 693 37.1
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 5.3e-98 362.8 687 39.4
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.6e-97 360.5 678 41.4
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.4e-97 360.1 659 42.0
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 5.8e-97 359.4 709 37.9
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 1.3e-96 358.2 677 40.6
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.1e-95 355.1 816 37.0
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 5.5e-95 352.8 805 34.4
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 7.1e-95 352.4 681 40.4
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 2.7e-94 350.5 660 38.8
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 1.5e-92 344.7 672 36.5
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.9e-92 344.4 730 37.3
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.1e-90 338.6 576 42.9
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 4.1e-90 336.7 662 38.4
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 5.3e-90 336.3 661 37.5
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.2e-89 335.1 667 36.9
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 2.6e-89 334.0 668 37.7
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 3.4e-89 333.6 662 38.2
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 4.5e-89 333.2 660 38.3
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.9e-87 327.8 681 36.3
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 1.9e-87 327.8 709 37.7
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.2e-87 327.0 769 35.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 2.1e-86 324.3 657 36.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 2.1e-86 324.3 693 36.7
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.0e-85 322.0 866 33.0
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.3e-85 320.9 667 37.9
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 5.1e-85 319.7 675 38.5
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.1e-84 318.5 764 34.2
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 4.3e-84 316.6 870 32.3
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.6e-83 314.7 742 35.2
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.6e-83 314.7 660 37.7
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.2e-83 314.3 665 38.5
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.3e-83 312.8 895 32.7
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.0e-81 307.8 826 33.9
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 2.6e-81 307.4 727 36.5
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.3e-80 305.1 811 32.9
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 5.0e-80 303.1 615 38.2
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 8.5e-80 302.4 658 36.8
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 4.2e-79 300.1 823 33.0
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.2e-79 300.1 774 33.6
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.1e-78 297.7 654 35.8
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.6e-78 297.0 678 35.1
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.6e-78 297.0 903 30.2
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 3.0e-77 293.9 638 36.1
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 9.7e-76 288.9 657 33.9
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.7e-75 288.1 713 35.3
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 7.7e-73 279.3 698 33.8
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 3.8e-72 276.9 661 34.5
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-71 275.4 632 37.2
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 5.5e-71 273.1 626 36.4
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.1e-70 271.2 555 41.6
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 3.6e-70 270.4 764 31.3
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.4e-69 268.5 652 34.0
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.8e-69 268.1 697 32.7
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 5.1e-69 266.5 692 34.0
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 1.7e-67 261.5 707 33.8
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 8.2e-67 259.2 694 32.7
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 2.6e-65 254.2 544 37.5
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.6e-60 237.7 502 36.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.1e-58 230.7 566 33.9
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.9e-56 224.2 596 34.7
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 5.0e-56 223.4 716 29.3
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 6.5e-56 223.0 649 31.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.6e-54 218.4 561 33.2
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.6e-54 217.2 560 33.4
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 6.1e-54 216.5 648 30.7
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.0e-53 214.2 165 67.9
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 2.2e-51 208.0 645 30.7
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.3e-51 206.5 827 27.2
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.1e-47 195.7 343 38.5
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 2.5e-47 194.5 630 31.3
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.6e-46 190.7 443 36.3
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.0e-45 189.1 845 27.0
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 8.8e-45 186.0 644 30.0
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 2.8e-43 181.0 447 33.1
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.1e-42 177.2 370 36.5
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.7e-40 171.8 325 41.2
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 5.6e-39 166.8 168 54.8
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.3e-37 161.4 158 57.0
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.2e-36 159.1 218 45.9
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 9.8e-36 156.0 223 44.4
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 4.9e-35 153.7 718 26.0
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 2.4e-34 151.4 462 31.2
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.2e-33 149.1 697 27.3
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.9e-32 144.1 232 42.7
Actinidia26737 Actinidia chinensis HOM05D004112 ORTHO05D004739 7.5e-28 129.8 201 51.7
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.2e-27 128.3 382 29.8
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.7e-27 127.5 105 64.8
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 6.4e-27 126.7 168 45.8
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.9e-26 125.2 387 33.9
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 3.2e-26 124.4 387 33.9
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 4.6e-25 120.6 379 31.1
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 3.3e-23 114.4 378 29.6
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 9.5e-23 112.8 170 49.4
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.2e-21 107.1 84 58.3
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.8e-21 106.7 545 25.7
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.8e-20 103.6 198 37.9
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 5.8e-20 103.6 166 40.4
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 3.2e-18 97.8 182 41.2
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 4.1e-18 97.4 193 36.3
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 6.0e-17 93.6 222 40.5
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.3e-16 92.4 653 26.0
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.3e-16 91.7 86 54.7
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.3e-15 87.4 151 37.1
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.6e-15 87.0 65 64.6
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 9.5e-15 86.3 126 42.1
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 1.2e-14 85.9 304 28.9
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 2.8e-14 84.7 379 27.4
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 3.4e-12 77.8 105 44.8
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 4.4e-12 77.4 79 51.9
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 4.4e-12 77.4 60 56.7
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.9e-11 73.9 90 37.8
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 8.4e-11 73.2 88 36.4
Sc02g0003070 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.0e-08 66.2 359 27.0
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 5.1e-08 63.9 102 41.2
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.6e-06 58.9 85 43.5


User provided reference genes

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