Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.4e-96 353.6 169 100.0
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.4e-73 278.5 153 88.2
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.4e-68 260.8 153 82.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.1e-66 256.9 153 80.4
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 4.1e-66 255.0 154 80.5
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 5.3e-66 254.6 153 76.5
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 2.6e-65 252.3 153 76.5
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.5e-65 251.9 151 79.5
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.7e-64 249.6 153 77.8
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.8e-64 248.4 153 77.1
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 6.5e-64 247.7 153 79.1
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.4e-63 246.5 153 76.5
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.9e-63 246.1 153 76.5
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.5e-63 245.7 153 77.1
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 4.2e-63 245.0 153 76.5
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 4.2e-63 245.0 153 76.5
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 4.2e-63 245.0 153 76.5
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 4.2e-63 245.0 156 73.7
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 7.2e-63 244.2 153 77.1
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 9.4e-63 243.8 152 75.7
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.2e-62 243.4 153 75.8
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.6e-62 243.0 153 75.2
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.1e-62 242.7 153 72.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 3.6e-62 241.9 153 74.5
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 4.7e-62 241.5 153 74.5
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.7e-62 241.5 153 73.9
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 6.1e-62 241.1 153 74.5
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 8.0e-62 240.7 153 74.5
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.8e-61 239.6 153 74.5
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.3e-61 239.2 153 76.5
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.9e-61 238.4 153 73.9
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 1.1e-60 236.9 153 72.5
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.5e-60 236.5 153 72.5
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 2.0e-60 236.1 153 72.5
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.0e-60 236.1 153 72.5
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 4.4e-60 235.0 153 71.9
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.7e-59 233.0 153 72.5
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.2e-59 232.6 153 73.9
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.8e-59 232.3 154 72.7
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.7e-59 231.9 153 71.2
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 3.7e-59 231.9 153 73.2
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 4.8e-59 231.5 154 72.7
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.8e-59 231.5 150 73.3
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.2e-59 230.7 150 73.3
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.1e-58 230.3 155 70.3
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.1e-58 230.3 153 73.2
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.1e-58 230.3 153 73.2
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.1e-58 230.3 153 73.2
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.1e-58 230.3 153 71.2
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.1e-58 228.8 153 71.2
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 4.1e-58 228.4 154 70.8
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 5.3e-58 228.0 153 69.9
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 5.3e-58 228.0 153 69.9
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.2e-57 226.9 160 69.4
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 3.5e-57 225.3 153 67.3
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 4.5e-57 224.9 151 72.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 4.5e-57 224.9 153 70.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 5.9e-57 224.6 153 71.2
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 5.9e-57 224.6 151 71.5
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.0e-56 223.8 153 69.3
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.7e-56 223.0 153 69.9
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 2.2e-56 222.6 153 69.3
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.2e-56 222.6 156 69.9
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.8e-56 221.9 178 64.0
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.5e-55 219.9 153 68.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.9e-55 219.5 153 68.0
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 2.5e-55 219.2 155 69.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.5e-55 219.2 153 66.0
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.2e-55 218.8 154 68.8
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 5.5e-55 218.0 153 69.9
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 7.2e-55 217.6 129 80.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 9.4e-55 217.2 154 67.5
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.1e-54 216.1 157 63.7
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.1e-54 216.1 151 70.2
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.1e-54 216.1 153 65.4
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.7e-54 215.7 154 66.9
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 6.7e-53 211.1 154 64.9
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 6.7e-53 211.1 153 67.3
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.6e-52 209.1 181 59.7
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 9.7e-52 207.2 144 68.8
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 1.7e-51 206.5 135 72.6
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 4.1e-50 201.8 155 64.5
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.1e-50 201.8 113 88.5
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 4.1e-50 201.8 129 72.9
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 7.0e-50 201.1 154 66.2
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.6e-49 199.9 156 60.9
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 3.5e-49 198.7 168 57.1
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 4.5e-49 198.4 155 63.2
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.9e-49 198.0 155 63.2
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.7e-48 196.4 159 62.3
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 8.5e-48 194.1 159 60.4
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 1.1e-47 193.7 153 62.1
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.2e-47 192.2 153 64.7
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.2e-46 190.3 156 60.9
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.7e-46 189.1 150 58.7
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 8.0e-46 187.6 146 65.1
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.8e-45 186.4 157 59.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.3e-45 186.0 129 69.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 2.3e-45 186.0 153 60.8
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 2.8e-43 179.1 171 54.4
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.9e-41 171.4 182 50.5
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 3.8e-40 168.7 157 50.3
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-39 167.2 123 66.7
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 5.5e-39 164.9 153 53.6
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 6.1e-38 161.4 162 50.0
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 8.0e-38 161.0 88 84.1
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.8e-37 159.8 156 51.3
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.5e-36 156.8 129 57.4
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.5e-36 156.8 125 58.4
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 2.0e-36 156.4 153 50.3
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 2.6e-36 156.0 129 55.8
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.3e-35 153.7 122 63.9
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 5.9e-33 144.8 90 70.0
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-30 137.1 153 45.1
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.2e-30 137.1 144 48.6
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 2.0e-28 129.8 100 65.0
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 3.4e-28 129.0 153 43.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.3e-27 127.1 165 42.4
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.2e-27 126.3 153 43.1
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.2e-27 126.3 153 43.1
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 4.9e-27 125.2 72 80.6
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 1.4e-26 123.6 153 41.2
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.4e-26 123.6 153 41.2
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 1.4e-26 123.6 153 41.2
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.4e-26 123.6 153 41.2
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.4e-26 123.6 153 41.2
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.4e-26 122.9 169 38.5
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 5.4e-26 121.7 149 40.9
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.0e-26 121.3 71 78.9
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.6e-15 85.1 78 52.6
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.1e-13 79.3 48 75.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 4.1e-10 68.9 49 71.4
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.1e-09 66.6 34 85.3


User provided reference genes

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