Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023810 Camellia sinensis var. sinensis HOM05D021861 ORTHO05D024722 4.3e-171 604.7 344 100.0
CSS0006915 Camellia sinensis var. sinensis HOM05D021861 ORTHO05D024722 8.8e-92 341.3 415 60.2
CSS0012698 Camellia sinensis var. sinensis HOM05D021861 ORTHO05D024722 6.3e-82 308.5 365 56.2
CSS0019117 Camellia sinensis var. sinensis HOM05D021861 ORTHO05D024722 6.7e-15 85.9 87 56.3
Actinidia01028 Actinidia chinensis HOM05D000480 ORTHO05D000313 2.5e-14 84.0 173 32.9
Thecc.01G400000 Theobroma cacao HOM05D000480 ORTHO05D000313 2.5e-14 84.0 129 39.5
TAR058G0001 Trochodendron aralioides HOM05D000480 ORTHO05D000313 3.7e-13 80.1 218 27.5
Dinv16885 Davidia involucrata HOM05D021861 ORTHO05D024722 2.4e-12 77.4 177 31.6
Actinidia21630 Actinidia chinensis HOM05D000480 ORTHO05D000313 1.2e-11 75.1 135 31.9
CSS0018771 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 1.0e-10 72.0 200 30.5
arahy.Tifrunner.gnm1.ann1.W8NE4R Arachis hypogaea HOM05D000480 ORTHO05D000313 1.3e-10 71.6 206 28.6
Cfa012460 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.9e-10 70.5 189 26.5
Actinidia01031 Actinidia chinensis HOM05D000480 ORTHO05D013372 3.8e-10 70.1 150 33.3
Gorai.011G252700 Gossypium raimondii HOM05D000480 ORTHO05D000313 3.8e-10 70.1 181 28.7
SEGI_27543 Sequoiadendron giganteum HOM05D000264 ORTHO05D000152 6.5e-10 69.3 134 32.1
Psat0s2372g0040 Pisum sativum HOM05D000264 ORTHO05D000152 8.4e-10 68.9 117 29.1
Hma1.2p1_0502F.1_g167920 Hydrangea macrophylla HOM05D000480 ORTHO05D000313 1.1e-09 68.6 122 35.2
TAR374G0158 Trochodendron aralioides HOM05D000480 ORTHO05D000313 1.4e-09 68.2 197 28.9
Ciclev10004971m.g Citrus clementina HOM05D000480 ORTHO05D000313 2.5e-09 67.4 155 27.7
QL01p008822 Quercus lobata HOM05D000480 ORTHO05D000313 2.5e-09 67.4 145 27.6
Thecc.03G145400 Theobroma cacao HOM05D000480 ORTHO05D000313 4.2e-09 66.6 149 28.2
Manes.09G064501 Manihot esculenta HOM05D000480 ORTHO05D000313 5.5e-09 66.2 169 34.9
PSO170G3744 Papaver somniferum HOM05D000448 ORTHO05D000291 7.1e-09 65.9 190 25.8
Psat2g024840 Pisum sativum HOM05D000264 ORTHO05D000152 7.1e-09 65.9 117 30.8
Cc01_g07190 Coffea canephora HOM05D000480 ORTHO05D000313 1.2e-08 65.1 144 28.5
Manes.09G064600 Manihot esculenta HOM05D000480 ORTHO05D000313 1.6e-08 64.7 150 34.0
Nn1g09256 Nelumbo nucifera HOM05D000480 ORTHO05D000313 1.6e-08 64.7 142 30.3
PSO302G0297 Papaver somniferum HOM05D000448 ORTHO05D000291 2.7e-08 63.9 126 29.4
TAR023G0002 Trochodendron aralioides HOM05D000480 ORTHO05D000313 2.7e-08 63.9 173 27.2
Actinidia14393 Actinidia chinensis HOM05D000480 ORTHO05D000313 4.6e-08 63.2 174 29.3
Actinidia11041 Actinidia chinensis HOM05D000264 ORTHO05D000152 6.0e-08 62.8 149 29.5
Actinidia25362 Actinidia chinensis HOM05D000480 ORTHO05D000313 6.0e-08 62.8 128 32.8
QL01p009420 Quercus lobata HOM05D000480 ORTHO05D000313 6.0e-08 62.8 149 28.2
Prupe.7G182300 Prunus persica HOM05D000264 ORTHO05D000152 7.9e-08 62.4 157 28.7
CANSAT25G3728 Cannabis sativa HOM05D000480 ORTHO05D000313 1.0e-07 62.0 155 29.7
Medtr8g040930 Medicago truncatula HOM05D000480 ORTHO05D000313 1.0e-07 62.0 199 27.1
Medtr8g041240 Medicago truncatula HOM05D000480 ORTHO05D000313 1.0e-07 62.0 199 27.1
QL10p001466 Quercus lobata HOM05D000480 ORTHO05D000313 1.0e-07 62.0 146 27.4
THA.LOC104820906 Tarenaya hassleriana HOM05D000480 ORTHO05D000313 1.0e-07 62.0 141 28.4
CAN.G756.43 Capsicum annuum HOM05D000480 ORTHO05D000313 1.3e-07 61.6 140 31.4
Eucgr.B00903 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.3e-07 61.6 152 27.0
Phvul.011G164400 Phaseolus vulgaris HOM05D000480 ORTHO05D000313 1.3e-07 61.6 145 26.9
arahy.Tifrunner.gnm1.ann1.U8895U Arachis hypogaea HOM05D000082 ORTHO05D001639 1.8e-07 61.2 164 28.7
CSS0049062 Camellia sinensis var. sinensis HOM05D011745 ORTHO05D012903 1.8e-07 61.2 85 44.7
PGR031G3410 Punica granatum HOM05D000480 ORTHO05D000313 1.8e-07 61.2 124 30.6
PGR142G3359 Punica granatum HOM05D000480 ORTHO05D000313 1.8e-07 61.2 138 29.7
Ciclev10019837m.g Citrus clementina HOM05D000480 ORTHO05D000313 2.3e-07 60.8 150 27.3
Cfa010029 Carpinus fangiana HOM05D000480 ORTHO05D000313 3.0e-07 60.5 125 29.6
Dinv34535 Davidia involucrata HOM05D011745 ORTHO05D012903 3.0e-07 60.5 169 27.8
Migut.E01205 Erythranthe guttata HOM05D000480 ORTHO05D000313 3.0e-07 60.5 173 27.2
Psat2g025280 Pisum sativum HOM05D000264 ORTHO05D000152 3.0e-07 60.5 117 27.4
ClCG09G012690 Citrullus lanatus HOM05D000480 ORTHO05D000313 3.9e-07 60.1 100 30.0
CsaV3_2G016990 Cucumis sativus L. HOM05D000448 ORTHO05D000291 5.1e-07 59.7 145 25.5
Atru.chr7.1876 Acer truncatum HOM05D000448 ORTHO05D000291 6.7e-07 59.3 91 28.6
Thecc.10G054100 Theobroma cacao HOM05D000480 ORTHO05D000313 6.7e-07 59.3 146 26.0
AUR62044581 Chenopodium quinoa HOM05D000480 ORTHO05D000313 8.7e-07 58.9 131 29.0
AUR62044582 Chenopodium quinoa HOM05D000480 ORTHO05D000313 8.7e-07 58.9 131 29.0
SEGI_21079 Sequoiadendron giganteum HOM05D000264 ORTHO05D000152 8.7e-07 58.9 139 27.3
BcaB02g06911 Brassica carinata HOM05D000264 ORTHO05D000152 1.1e-06 58.5 139 25.2
A10p02160 Brassica napus HOM05D000264 ORTHO05D000152 1.1e-06 58.5 140 26.4
Cc00_g18020 Coffea canephora HOM05D000480 ORTHO05D000313 1.1e-06 58.5 144 27.1
Haze_22256 Corylus avellana HOM05D000480 ORTHO05D000313 1.1e-06 58.5 112 30.4
Duzib106G0677 Durio zibethinus HOM05D000480 ORTHO05D000313 1.1e-06 58.5 198 25.8
Sc20g0002390 Simmondsia chinensis HOM05D000454 ORTHO05D000591 1.1e-06 58.5 69 39.1
BraA10t42486Z Brassica rapa HOM05D000264 ORTHO05D000152 1.5e-06 58.2 140 26.4
Psat2g025480 Pisum sativum HOM05D000264 ORTHO05D000152 1.5e-06 58.2 149 26.8
PGR031G3290 Punica granatum HOM05D000480 ORTHO05D000313 1.5e-06 58.2 145 28.3
Rhsim06G0145000 Rhododendron simsii HOM05D000264 ORTHO05D000152 1.5e-06 58.2 151 28.5
SEGI_21374 Sequoiadendron giganteum HOM05D000264 ORTHO05D000152 1.5e-06 58.2 205 27.8
ATR0315G040 Amborella trichopoda HOM05D034033 ORTHO05D000313 1.9e-06 57.8 118 29.7
RcHm_v2.0_Chr1g0342341 Rosa chinensis HOM05D000448 ORTHO05D000291 1.9e-06 57.8 125 28.8
AUR62043768 Chenopodium quinoa HOM05D000448 ORTHO05D000313 2.5e-06 57.4 135 29.6
Cc01_g07230 Coffea canephora HOM05D000480 ORTHO05D000313 2.5e-06 57.4 141 27.0
Gorai.004G281500 Gossypium raimondii HOM05D000448 ORTHO05D000313 2.5e-06 57.4 134 31.3
Hma1.2p1_2284F.1_g318890 Hydrangea macrophylla HOM05D000448 ORTHO05D000313 2.5e-06 57.4 99 30.3
Ciclev10024339m.g Citrus clementina HOM05D000480 ORTHO05D000313 3.3e-06 57.0 124 30.6
MELO3C013066.2 Cucumis melo HOM05D000448 ORTHO05D000291 3.3e-06 57.0 144 24.3
Rhsim06G0144300 Rhododendron simsii HOM05D000264 ORTHO05D000152 3.3e-06 57.0 118 28.0
Rhsim06G0144500 Rhododendron simsii HOM05D000264 ORTHO05D000152 3.3e-06 57.0 151 27.8
COL.COLO4_10975 Corchorus olitorius HOM05D000480 ORTHO05D000313 4.3e-06 56.6 121 26.4
Eucgr.C03587 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.3e-06 56.6 88 33.0
Eucgr.D01270 Eucalyptus grandis HOM05D000264 ORTHO05D000152 4.3e-06 56.6 149 28.2
Lalb_Chr20g0108371 Lupinus albus HOM05D000264 ORTHO05D000152 4.3e-06 56.6 120 28.3
QL01p009236 Quercus lobata HOM05D000480 ORTHO05D000313 4.3e-06 56.6 148 26.4
SEGI_15403 Sequoiadendron giganteum HOM05D000006 ORTHO05D000001 4.3e-06 56.6 139 27.3
CiPaw.11G073300 Carya illinoinensis HOM05D000480 ORTHO05D000313 5.7e-06 56.2 112 29.5
Ciclev10024088m.g Citrus clementina HOM05D000480 ORTHO05D000313 5.7e-06 56.2 101 32.7
Gorai.011G252600 Gossypium raimondii HOM05D000480 ORTHO05D000313 5.7e-06 56.2 142 26.8
Medtr8g073275 Medicago truncatula HOM05D000480 ORTHO05D000313 5.7e-06 56.2 150 28.7
Rhsim06G0144200 Rhododendron simsii HOM05D000264 ORTHO05D000152 5.7e-06 56.2 151 28.5
AUR62031881 Chenopodium quinoa HOM05D000454 ORTHO05D002637 7.4e-06 55.8 148 25.7
Gohir.A08G242600 Gossypium hirsutum HOM05D000448 ORTHO05D000313 7.4e-06 55.8 134 30.6
CiPaw.11G073200 Carya illinoinensis HOM05D000480 ORTHO05D000313 9.6e-06 55.5 112 28.6
HanXRQChr06g0174631 Helianthus annuus HOM05D000264 ORTHO05D000152 9.6e-06 55.5 149 27.5
Lj4A495G13 Lonicera japonica HOM05D000480 ORTHO05D000313 9.6e-06 55.5 164 26.2
vmacro12289 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 9.6e-06 55.5 148 29.1


User provided reference genes

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