Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023788 Camellia sinensis var. sinensis HOM05D008906 ORTHO05D010752 8.3e-74 280.4 154 100.0
Lj3A898T32 Lonicera japonica HOM05D008906 ORTHO05D010752 9.9e-35 150.6 149 50.3
ClCG11G000600 Citrullus lanatus HOM05D008906 ORTHO05D010752 5.1e-31 138.3 150 46.0
ClCG03G011130 Citrullus lanatus HOM05D008906 ORTHO05D010752 3.3e-30 135.6 149 45.0
Sed0004553 Sechium edule HOM05D008906 ORTHO05D010752 4.3e-30 135.2 149 42.3
Sed0001310 Sechium edule HOM05D008906 ORTHO05D010752 2.1e-29 132.9 149 42.3
Sed0018125 Sechium edule HOM05D008906 ORTHO05D010752 3.6e-29 132.1 150 40.7
ClCG03G011160 Citrullus lanatus HOM05D008906 ORTHO05D010752 1.8e-28 129.8 149 43.6
MD09G1162800 Malus domestica HOM05D008906 ORTHO05D010752 5.2e-28 128.3 152 42.1
MELO3C010005.2 Cucumis melo HOM05D008906 ORTHO05D010752 4.4e-27 125.2 149 41.6
MD10G1107800 Malus domestica HOM05D008906 ORTHO05D010752 1.7e-26 123.2 150 44.7
MD17G1147800 Malus domestica HOM05D008906 ORTHO05D010752 1.7e-26 123.2 152 40.1
CsaV3_1G044120 Cucumis sativus L. HOM05D008906 ORTHO05D010752 2.9e-26 122.5 149 39.6
Dinv13668 Davidia involucrata HOM05D008906 ORTHO05D010752 6.0e-24 114.8 127 48.8
SGA_v2.0_scaffold163G38045 Striga asiatica HOM05D008906 ORTHO05D010752 3.4e-19 99.0 128 38.3
Lj1A515T9 Lonicera japonica HOM05D008906 ORTHO05D010752 2.2e-18 96.3 151 36.4
ClCG03G011150 Citrullus lanatus HOM05D008906 ORTHO05D010752 1.4e-17 93.6 150 38.7
Ah.14g087280 Amaranthus hybridus HOM05D008906 ORTHO05D010752 3.2e-17 92.4 152 34.2
Hma1.2p1_0543F.1_g175190 Hydrangea macrophylla HOM05D008906 ORTHO05D010752 1.6e-16 90.1 151 34.4
SGA_v2.0_scaffold11G05641 Striga asiatica HOM05D008906 ORTHO05D010752 1.0e-15 87.4 158 35.4
Os04g0308600 Oryza sativa ssp. japonica HOM05D008906 ORTHO05D010752 1.5e-14 83.6 150 32.7
Cre07.g321750 Chlamydomonas reinhardtii HOM05D008906 ORTHO05D010752 3.3e-14 82.4 151 33.8
Dinv13661 Davidia involucrata HOM05D008906 ORTHO05D010752 2.8e-13 79.3 84 48.8
AUR62036570 Chenopodium quinoa HOM05D008906 ORTHO05D010752 2.4e-12 76.3 153 31.4
EL10Ac8g20498 Beta vulgaris HOM05D008906 ORTHO05D010752 1.3e-10 70.5 150 34.0
Os04g0309900 Oryza sativa ssp. japonica HOM05D008906 ORTHO05D010752 2.9e-10 69.3 150 29.3
Zm00001eb137480 Zea mays HOM05D008906 ORTHO05D010752 2.4e-09 66.2 160 26.9
AUR62027397 Chenopodium quinoa HOM05D008906 ORTHO05D010752 7.1e-09 64.7 150 28.0
DCAR_016018 Daucus carota HOM05D008906 ORTHO05D010752 1.2e-08 63.9 157 29.9
DCAR_016019 Daucus carota HOM05D008906 ORTHO05D010752 1.2e-08 63.9 157 29.9
Ah.14g087260 Amaranthus hybridus HOM05D008906 ORTHO05D010752 1.6e-08 63.5 152 30.3
Actinidia30933 Actinidia chinensis HOM05D008906 ORTHO05D010752 3.5e-08 62.4 150 31.3
Sc05g0004700 Simmondsia chinensis HOM05D014687 ORTHO05D010752 1.3e-07 60.5 199 25.1
Zm00001eb137390 Zea mays HOM05D008906 ORTHO05D010752 8.7e-07 57.8 160 29.4
Sc02g0003570 Simmondsia chinensis HOM05D014687 ORTHO05D010752 7.4e-06 54.7 160 29.4


User provided reference genes

Program Settings