Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1355.1 704 100.0
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1292.7 712 95.1
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1287.7 699 95.9
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1282.7 712 94.4
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1235.7 728 90.0
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1200.7 707 88.5
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1180.2 714 86.0
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1166.4 713 84.6
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1165.6 712 84.8
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1163.7 704 85.7
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1163.3 705 84.4
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1161.4 708 84.7
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1161.0 712 84.1
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1161.0 719 84.6
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1160.2 715 84.2
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1158.7 714 83.9
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1158.3 705 85.7
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1157.5 705 85.5
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1155.2 712 84.1
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1152.5 709 84.3
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1150.6 711 83.4
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1150.6 713 83.5
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1150.6 713 83.5
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1149.4 700 84.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1149.4 704 83.8
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1147.5 705 85.2
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1147.1 706 84.1
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1145.6 705 83.8
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1144.4 713 83.2
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1143.6 714 83.5
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1142.5 706 83.6
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1142.5 710 82.0
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1141.3 709 84.5
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1140.2 715 85.0
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1139.8 700 83.0
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1138.3 704 83.4
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1138.3 711 82.3
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1137.1 702 82.9
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1132.1 701 83.0
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1130.9 732 81.0
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1130.2 702 82.8
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1128.6 692 84.4
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1127.5 696 82.9
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1124.8 713 81.3
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1124.8 701 83.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1124.0 718 83.7
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1118.6 705 82.8
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1117.8 712 81.3
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1114.0 701 82.2
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1112.1 705 82.0
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1110.9 711 81.0
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1109.4 693 82.5
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1100.5 680 85.7
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1099.3 710 81.1
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1099.0 688 82.1
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1095.5 711 81.3
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1095.5 711 81.3
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 726 81.8
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1090.5 693 81.2
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 709 77.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1087.4 709 77.7
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1079.7 706 79.0
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1077.8 708 77.5
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1075.5 709 76.7
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 7.2e-311 1070.1 711 79.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.1e-306 1056.2 704 78.1
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 2.7e-305 1051.6 702 77.2
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 3.5e-305 1051.2 701 77.6
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 4.6e-305 1050.8 701 77.5
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 1.0e-304 1049.7 701 77.5
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 1.0e-304 1049.7 702 77.4
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 3.0e-304 1048.1 701 77.5
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 3.0e-304 1048.1 701 77.5
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 5.1e-304 1047.3 708 78.0
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.1e-303 1046.2 725 77.9
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 2.5e-303 1045.0 701 77.3
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 4.3e-303 1044.3 701 76.5
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 7.4e-303 1043.5 698 77.5
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 8.1e-302 1040.0 619 85.6
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 699 76.0
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 2.4e-301 1038.5 702 79.1
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.5e-300 1035.8 702 75.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 4.9e-299 1030.8 698 76.2
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 4.9e-299 1030.8 655 82.0
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 3.2e-298 1028.1 698 75.9
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 5.5e-298 1027.3 619 85.3
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 2.1e-297 1025.4 698 75.8
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 2.1e-297 1025.4 698 75.8
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 2.1e-297 1025.4 698 75.8
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 6.7e-296 1020.4 693 76.0
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 5.6e-295 1017.3 704 74.9
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 7.6e-292 1006.9 716 76.8
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 4.9e-291 1004.2 690 75.2
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.1e-290 1003.0 695 77.8
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 2.8e-286 988.4 659 78.5
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 2.8e-286 988.4 685 78.2
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 4.8e-286 987.6 692 73.8
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 6.3e-286 987.3 702 73.4
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.1e-285 986.5 655 77.7
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 5.9e-284 980.7 686 74.1
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.0e-283 977.6 704 72.0
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 9.7e-279 963.4 583 85.1
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 6.3e-278 960.7 713 72.4
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.6e-276 955.3 704 70.7
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.8e-272 942.6 694 71.3
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.8e-270 935.3 541 88.7
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.5e-268 929.5 648 74.2
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.8e-267 924.9 569 85.2
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.5e-258 896.3 685 72.4
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.2e-257 893.3 736 69.0
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.3e-235 820.1 708 63.6
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.7e-233 811.6 537 78.0
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.4e-232 810.1 450 91.8
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 5.4e-229 798.1 522 78.2
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.0e-227 791.6 567 73.4
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.1e-213 745.3 557 75.0
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.1e-200 704.1 680 55.3
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 8.7e-195 684.5 618 62.5
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.4e-192 676.4 402 86.8
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.1e-192 676.0 392 88.5
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.2e-182 643.3 632 53.5
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.0e-171 607.8 399 83.0
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.4e-162 575.1 517 63.4
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.3e-161 574.3 638 48.4
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.8e-153 546.6 639 46.8
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.1e-152 543.1 639 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.4e-130 469.9 630 42.2
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.3e-129 465.3 635 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.1e-125 454.9 647 41.1
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.5e-125 453.8 723 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.1e-120 438.3 622 42.0
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.2e-112 408.7 306 69.3
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.2e-108 398.3 399 53.9
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.4e-106 390.2 250 81.2
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-104 384.4 399 60.2
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.9e-72 278.1 224 68.8
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.0e-70 272.3 220 62.3
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-61 242.3 171 78.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.0e-57 226.9 130 86.2
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.5e-33 146.7 78 92.3
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.4e-29 134.0 138 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 9.7e-29 132.9 101 65.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.0e-25 120.6 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.7e-23 114.8 59 88.1
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 8.0e-23 113.2 66 86.4
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 2.3e-22 111.7 65 86.2
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 3.0e-22 111.3 61 88.5
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 1.5e-21 109.0 62 88.7
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 2.6e-21 108.2 92 59.8
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 5.7e-21 107.1 62 88.7
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 2.5e-16 91.7 56 76.8
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.3e-06 58.5 30 76.7


User provided reference genes

Program Settings