Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 3.0e-34 147.9 72 100.0
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 8.2e-24 113.2 70 78.6
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 5.8e-22 107.1 68 79.4
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 7.1e-20 100.1 67 73.1
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 3.9e-18 94.4 70 65.7
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 6.7e-18 93.6 61 73.8
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 6.7e-18 93.6 61 75.4
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 8.7e-18 93.2 67 74.6
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 1.5e-17 92.4 53 79.2
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 1.9e-17 92.0 61 75.4
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 2.5e-17 91.7 62 77.4
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 3.3e-17 91.3 72 66.7
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 3.3e-17 91.3 61 77.0
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 4.3e-17 90.9 56 73.2
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 7.4e-17 90.1 67 67.2
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 2.8e-16 88.2 67 68.7
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 6.3e-16 87.0 62 72.6
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.4e-15 85.9 62 71.0
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 1.4e-15 85.9 62 71.0
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 1.4e-15 85.9 61 70.5
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 2.4e-15 85.1 53 77.4
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 3.1e-15 84.7 62 72.6
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 4.1e-15 84.3 64 70.3
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 4.1e-15 84.3 52 78.8
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 6.9e-15 83.6 61 68.9
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 6.9e-15 83.6 61 72.1
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 9.0e-15 83.2 66 63.6
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 1.5e-14 82.4 68 60.3
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 1.5e-14 82.4 62 69.4
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 1.5e-14 82.4 62 71.0
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 1.5e-14 82.4 55 74.5
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 2.0e-14 82.0 55 70.9
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 2.6e-14 81.6 55 70.9
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 4.5e-14 80.9 46 78.3
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 7.7e-14 80.1 50 72.0
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 7.7e-14 80.1 63 66.7
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 1.3e-13 79.3 56 67.9
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 2.2e-13 78.6 63 65.1
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 2.9e-13 78.2 68 58.8
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 2.9e-13 78.2 50 76.0
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 2.9e-13 78.2 55 69.1
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 2.9e-13 78.2 63 63.5
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 1.1e-12 76.3 40 85.0
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 2.5e-12 75.1 68 58.8
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 4.2e-12 74.3 66 57.6
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 1.2e-11 72.8 67 56.7
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 1.6e-11 72.4 38 84.2
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 1.6e-11 72.4 47 70.2
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 1.6e-11 72.4 47 70.2
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 2.1e-11 72.0 56 58.9
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 3.6e-11 71.2 56 60.7
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 6.1e-11 70.5 56 57.1
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 6.1e-11 70.5 53 66.0
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 1.0e-10 69.7 68 52.9
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 1.4e-10 69.3 62 59.7
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 2.3e-10 68.6 53 64.2
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 3.0e-10 68.2 48 64.6
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 6.7e-10 67.0 59 59.3
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 1.5e-09 65.9 43 67.4
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 2.5e-09 65.1 41 75.6
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 1.7e-08 62.4 71 45.1
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 1.7e-08 62.4 31 83.9
Atru.chr5.494 Acer truncatum HOM05D011433 ORTHO05D013366 3.7e-08 61.2 74 50.0
Pp3c4_4750 Physcomitrium patens HOM05D008240 ORTHO05D010333 3.7e-08 61.2 48 62.5
Thecc.01G359100 Theobroma cacao HOM05D011433 ORTHO05D013366 1.1e-07 59.7 80 43.8
Potri.002G159800 Populus trichocarpa HOM05D011433 ORTHO05D013366 1.8e-07 58.9 71 49.3
Mapoly0108s0016 Marchantia polymorpha HOM05D008240 ORTHO05D010333 2.4e-07 58.5 46 56.5
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 4.1e-07 57.8 47 68.1
Gohir.D07G148300 Gossypium hirsutum HOM05D011433 ORTHO05D013366 9.1e-07 56.6 79 39.2
TWI59G1460 Tripterygium wilfordii HOM05D011433 ORTHO05D013366 1.2e-06 56.2 59 50.8
Gohir.A07G142400 Gossypium hirsutum HOM05D011433 ORTHO05D013366 1.5e-06 55.8 65 41.5
Gorai.001G169500 Gossypium raimondii HOM05D011433 ORTHO05D013366 1.5e-06 55.8 65 41.5
AUR62022563 Chenopodium quinoa HOM05D011433 ORTHO05D013366 2.0e-06 55.5 69 47.8
CAN.G78.78 Capsicum annuum HOM05D011433 ORTHO05D013366 4.5e-06 54.3 45 60.0
Potri.014G084350 Populus trichocarpa HOM05D011433 ORTHO05D013366 5.9e-06 53.9 56 50.0
EL10Ac1g00417 Beta vulgaris HOM05D011433 ORTHO05D013366 7.7e-06 53.5 63 44.4


User provided reference genes

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