Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 8.5e-193 676.8 331 100.0
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 1.6e-135 486.5 350 72.3
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 2.4e-134 482.6 368 69.0
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 2.2e-132 476.1 337 70.3
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 1.1e-131 473.8 336 71.7
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 2.7e-130 469.2 397 62.5
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 3.0e-129 465.7 311 73.6
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 1.1e-128 463.8 306 73.2
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.6e-127 458.8 331 74.0
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 3.6e-127 458.8 331 74.0
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 3.6e-127 458.8 336 67.9
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 4.8e-127 458.4 334 68.3
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 1.8e-126 456.4 346 66.8
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 1.2e-125 453.8 282 75.2
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 2.0e-125 453.0 319 70.8
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 2.6e-125 452.6 320 69.4
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 4.4e-125 451.8 283 77.7
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 5.8e-125 451.4 314 71.3
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 2.9e-124 449.1 294 73.5
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 2.9e-124 449.1 319 70.8
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 3.8e-124 448.7 308 73.4
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 1.1e-123 447.2 279 77.4
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.1e-123 447.2 314 70.7
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.4e-123 446.8 315 70.8
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.4e-123 446.8 315 70.8
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 3.2e-123 445.7 277 76.9
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 5.4e-123 444.9 283 75.6
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 2.1e-122 443.0 319 68.3
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 7.9e-122 441.0 282 74.8
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 7.9e-122 441.0 282 73.4
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 1.0e-121 440.7 263 79.8
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 3.9e-121 438.7 310 70.3
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 8.7e-121 437.6 321 68.2
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 1.5e-120 436.8 321 67.6
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 5.6e-120 434.9 258 76.0
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 2.4e-118 429.5 275 72.4
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 4.0e-118 428.7 275 72.0
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 1.5e-117 426.8 282 72.7
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 2.0e-117 426.4 330 65.2
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 2.6e-117 426.0 277 70.8
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 2.6e-117 426.0 325 64.9
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 5.8e-117 424.9 275 73.8
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 4.9e-116 421.8 275 71.6
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 2.4e-115 419.5 272 74.6
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 2.4e-115 419.5 256 73.8
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 4.2e-115 418.7 287 67.9
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 3.5e-114 415.6 283 69.6
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 6.0e-114 414.8 281 67.6
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 6.0e-114 414.8 256 72.3
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 1.0e-113 414.1 277 69.3
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 1.3e-113 413.7 293 66.2
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 3.0e-113 412.5 286 71.3
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 6.7e-113 411.4 343 58.6
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 1.5e-112 410.2 257 72.8
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 7.4e-112 407.9 255 72.5
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 7.4e-112 407.9 255 72.5
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 7.4e-112 407.9 255 72.5
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 7.4e-112 407.9 279 68.1
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 9.6e-112 407.5 325 60.3
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 1.6e-111 406.8 279 70.3
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 1.6e-111 406.8 309 63.4
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 1.6e-111 406.8 309 63.8
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 2.1e-111 406.4 319 61.4
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 2.8e-111 406.0 341 60.4
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 2.8e-111 406.0 279 68.1
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 3.7e-111 405.6 258 70.2
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 1.1e-110 404.1 293 64.2
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 2.2e-108 396.4 225 81.8
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 2.9e-108 396.0 226 79.6
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 4.9e-108 395.2 274 66.8
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 8.4e-108 394.4 282 64.9
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 5.5e-107 391.7 295 64.1
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 1.2e-106 390.6 258 68.6
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 1.6e-106 390.2 252 70.2
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 6.0e-106 388.3 251 70.9
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 5.1e-105 385.2 271 66.1
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 1.1e-102 377.5 315 58.1
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 2.4e-102 376.3 242 74.0
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 1.2e-101 374.0 272 65.1
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 2.2e-100 369.8 247 68.0
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 1.3e-97 360.5 265 65.7
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 1.1e-94 350.9 292 57.2
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 9.0e-94 347.8 258 64.7
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 3.9e-89 332.4 256 60.9
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 2.0e-88 330.1 210 73.3
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 4.8e-87 325.5 265 60.4
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.1e-86 324.3 282 55.3
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 2.9e-84 316.2 184 78.8
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 6.5e-84 315.1 184 77.2
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 1.6e-82 310.5 265 57.0
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 2.7e-82 309.7 253 64.8
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 1.8e-81 307.0 198 68.7
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 4.4e-80 302.4 228 61.0
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 1.2e-77 294.3 190 70.5
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 2.6e-77 293.1 231 59.7
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 2.6e-77 293.1 231 59.7
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 3.2e-75 286.2 178 74.7
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 4.2e-75 285.8 292 47.9
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 4.0e-73 279.3 164 76.2
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 4.5e-69 265.8 178 68.0
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 5.9e-69 265.4 245 49.4
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 2.2e-68 263.5 170 70.0
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 3.8e-60 236.1 195 61.0
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 4.2e-59 232.6 223 48.0
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 2.7e-58 229.9 283 46.3
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 1.7e-52 210.7 150 67.3
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 1.4e-49 201.1 131 69.5
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 4.4e-48 196.1 131 67.9
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 6.2e-42 175.6 131 63.4
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 1.3e-39 167.9 245 37.1
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 8.3e-31 138.7 139 52.5
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 1.1e-30 138.3 91 70.3
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 2.8e-26 123.6 283 31.1
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 5.2e-25 119.4 256 32.8
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 3.2e-22 110.2 68 70.6
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 1.2e-21 108.2 87 60.9
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 1.9e-19 100.9 269 29.4
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 1.5e-08 64.7 52 65.4
Psat2g101840 Pisum sativum HOM05D006863 ORTHO05D044797 1.1e-06 58.5 53 54.7


User provided reference genes

Program Settings