Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 7.3e-209 730.3 374 100.0
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.2e-205 718.8 374 98.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.8e-151 539.7 374 75.9
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.8e-138 494.6 375 70.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.6e-137 492.7 329 79.0
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.3e-133 480.3 376 70.7
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.3e-133 479.6 381 68.2
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.6e-129 466.1 379 69.1
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.7e-125 453.4 367 68.9
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.3e-125 453.0 378 66.9
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.8e-115 419.5 374 62.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 6.8e-114 414.8 376 62.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 3.4e-113 412.5 376 62.5
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.4e-111 406.4 367 63.8
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 4.7e-107 392.1 384 58.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 8.1e-107 391.3 387 57.9
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 8.1e-107 391.3 396 59.8
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 6.8e-106 388.3 375 60.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.4e-105 385.6 389 57.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 8.3e-104 381.3 389 56.6
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.9e-103 380.2 391 58.1
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 7.8e-102 374.8 377 56.2
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 6.6e-101 371.7 377 58.4
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.1e-100 370.9 382 52.9
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.5e-100 370.5 383 56.1
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.5e-100 370.5 383 56.1
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.1e-99 366.7 260 70.4
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.6e-99 365.9 389 54.0
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 8.1e-99 364.8 411 54.0
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.8e-98 363.6 406 55.2
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 9.9e-97 357.8 387 53.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.9e-96 356.3 377 57.3
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 3.8e-96 355.9 409 53.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.8e-96 355.9 401 52.1
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.4e-95 354.0 380 56.1
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 9.2e-95 351.3 388 55.7
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.6e-94 350.5 382 50.5
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.1e-94 350.1 411 52.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 4.6e-94 349.0 363 57.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 4.6e-94 349.0 390 53.8
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 7.8e-94 348.2 392 55.1
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 3.3e-92 342.8 386 54.7
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 7.3e-92 341.7 380 53.2
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 8.1e-91 338.2 382 53.7
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 3.1e-90 336.3 380 53.7
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 6.9e-90 335.1 393 52.9
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 9.0e-90 334.7 417 49.9
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 3.4e-89 332.8 395 52.4
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 7.6e-89 331.6 386 53.9
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.9e-88 329.7 411 53.5
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.9e-88 328.9 416 48.8
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.4e-87 325.5 412 51.5
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.2e-86 324.3 381 53.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 2.7e-86 323.2 380 52.4
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.7e-86 323.2 400 49.5
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 6.0e-86 322.0 386 52.1
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.7e-85 320.5 409 50.9
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.3e-85 320.1 378 54.0
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.0e-85 319.7 427 48.2
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.1e-84 317.8 382 51.8
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.5e-84 316.6 379 51.5
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-82 310.5 403 48.9
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 3.1e-82 309.7 315 54.6
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 6.9e-82 308.5 379 50.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.9e-82 308.5 379 50.9
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 9.0e-82 308.1 381 51.7
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.0e-81 307.0 404 48.3
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.6e-81 306.6 379 50.1
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 4.5e-81 305.8 422 48.6
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.8e-81 305.4 379 52.5
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.4e-79 300.8 330 54.2
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.4e-79 300.1 417 47.5
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.6e-78 297.4 379 49.1
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.5e-78 296.2 407 47.4
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.3e-77 294.3 381 48.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 2.3e-77 293.5 379 51.2
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.9e-77 292.7 378 49.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 5.1e-77 292.4 380 48.2
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.1e-76 291.2 370 51.9
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.0e-74 282.7 395 47.8
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 4.5e-73 279.3 380 47.9
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 4.9e-72 275.8 396 46.2
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.1e-71 274.6 384 47.4
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.9e-71 273.9 271 59.8
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.9e-71 273.9 331 49.2
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 4.2e-71 272.7 404 46.3
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 5.5e-71 272.3 377 47.5
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.1e-70 270.4 394 45.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.3e-69 266.9 385 48.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 9.6e-68 261.5 377 45.9
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.3e-67 261.2 369 47.2
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 4.8e-67 259.2 407 44.0
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.1e-66 258.1 409 43.3
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 7.6e-65 251.9 417 42.2
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.9e-64 250.0 409 43.8
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 4.9e-64 249.2 409 42.3
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 7.1e-63 245.4 408 42.6
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 7.9e-62 241.9 329 50.2
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 2.3e-61 240.4 392 44.6
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 9.7e-60 235.0 407 44.0
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 3.7e-59 233.0 407 42.8
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 3.7e-59 233.0 407 42.8
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.9e-58 228.8 383 42.8
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.0e-57 227.3 407 41.8
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 4.5e-57 226.1 406 41.6
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.5e-57 226.1 255 54.9
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.0e-56 224.9 288 50.0
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 2.9e-56 223.4 406 41.4
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 3.6e-54 216.5 386 40.7
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 3.6e-54 216.5 411 38.0
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-52 211.5 420 41.0
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.1e-50 203.4 416 39.4
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.5e-49 201.1 416 39.2
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.6e-46 191.0 251 45.8
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.0e-45 188.3 418 38.5
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 3.0e-45 186.8 418 38.0
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 6.7e-45 185.7 417 37.6
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.0e-44 184.1 259 44.4
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 2.6e-44 183.7 258 43.0
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.7e-43 181.0 197 53.3
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.7e-43 181.0 252 44.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 6.3e-43 179.1 258 42.2
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.8e-42 177.6 217 46.1
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 1.8e-42 177.6 237 46.4
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.3e-42 176.0 264 43.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.2e-41 174.9 201 52.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 5.9e-41 172.6 252 46.0
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 7.7e-41 172.2 394 34.8
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.7e-40 171.0 256 42.2
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 2.9e-40 170.2 215 46.0
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.0e-40 169.5 324 40.7
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 6.5e-40 169.1 252 42.9
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 5.5e-39 166.0 196 47.4
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 7.2e-39 165.6 377 32.1
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 9.4e-39 165.2 258 41.9
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.7e-38 163.7 219 46.1
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 2.7e-38 163.7 412 33.5
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 3.6e-38 163.3 207 46.9
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-37 160.6 234 40.2
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 3.0e-37 160.2 270 44.1
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.9e-37 159.8 249 40.6
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 6.7e-37 159.1 257 42.8
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 8.8e-37 158.7 389 32.4
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.5e-36 157.9 274 42.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 4.4e-36 156.4 236 40.3
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-35 154.1 244 37.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 6.3e-35 152.5 241 41.5
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.4e-34 151.4 262 41.2
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.8e-34 151.0 230 43.5
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 4.1e-34 149.8 259 39.0
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 7.0e-34 149.1 329 36.2
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 9.1e-34 148.7 238 45.4
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 2.0e-33 147.5 421 33.7
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 5.0e-32 142.9 232 41.8
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.5e-31 141.4 270 36.7
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.0e-29 133.7 122 59.8
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.0e-29 133.3 268 37.3
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 7.0e-26 122.5 152 52.6
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.2e-25 121.7 89 61.8
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.2e-24 117.5 146 52.7
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.7e-22 110.5 219 41.1
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.4e-20 103.6 155 40.0
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 3.4e-20 103.6 155 40.0
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 6.3e-19 99.4 236 31.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-18 98.6 113 46.0
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.7e-16 91.3 47 80.9
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.5e-15 88.2 125 48.0
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.2e-15 85.9 122 40.2
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 4.4e-12 76.6 180 35.0
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 4.4e-12 76.6 148 41.2
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 3.7e-11 73.6 51 62.7


User provided reference genes

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