Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.6e-55 217.6 107 100.0
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.3e-38 162.2 90 88.9
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 7.3e-29 130.6 77 87.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.7e-25 119.4 75 80.0
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 2.2e-25 119.0 78 75.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.2e-24 114.8 74 74.3
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 7.1e-24 114.0 72 75.0
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 7.1e-24 114.0 72 75.0
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 7.1e-24 114.0 72 75.0
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 7.1e-24 114.0 72 75.0
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 7.1e-24 114.0 71 77.5
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 7.1e-24 114.0 74 77.0
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.2e-23 113.2 73 74.0
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.2e-23 113.2 74 74.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.6e-23 112.8 72 75.0
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.1e-23 112.5 72 75.0
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.1e-23 112.5 78 71.8
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 2.7e-23 112.1 72 80.6
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 3.5e-23 111.7 69 76.8
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.5e-23 111.7 78 69.2
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 3.5e-23 111.7 78 69.2
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 3.5e-23 111.7 74 73.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.5e-23 111.7 74 73.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.6e-23 111.3 72 73.6
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 4.6e-23 111.3 72 73.6
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 4.6e-23 111.3 71 74.6
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 4.6e-23 111.3 72 75.0
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 4.6e-23 111.3 70 77.1
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 6.0e-23 110.9 74 73.0
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 6.0e-23 110.9 72 72.2
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.0e-22 110.2 72 73.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.0e-22 110.2 70 75.7
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.0e-22 110.2 71 74.6
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.0e-22 110.2 72 73.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-22 109.8 72 72.2
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-22 109.8 72 72.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.3e-22 109.8 69 75.4
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-22 109.8 74 74.3
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.8e-22 109.4 72 73.6
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.3e-22 109.0 72 72.2
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 2.3e-22 109.0 72 72.2
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.3e-22 109.0 68 77.9
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.3e-22 109.0 73 74.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.3e-22 109.0 78 66.7
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.3e-22 109.0 74 71.6
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 3.0e-22 108.6 66 75.8
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 3.0e-22 108.6 72 75.0
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 3.0e-22 108.6 70 75.7
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 3.0e-22 108.6 68 75.0
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 3.0e-22 108.6 71 74.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 3.9e-22 108.2 74 73.0
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.9e-22 108.2 80 67.5
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 5.1e-22 107.8 72 72.2
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 5.1e-22 107.8 69 73.9
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 5.1e-22 107.8 65 80.0
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 6.7e-22 107.5 73 69.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 6.7e-22 107.5 73 74.0
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 6.7e-22 107.5 67 76.1
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 8.7e-22 107.1 72 70.8
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 8.7e-22 107.1 72 70.8
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 8.7e-22 107.1 72 70.8
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 8.7e-22 107.1 72 70.8
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 8.7e-22 107.1 68 75.0
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 8.7e-22 107.1 68 73.5
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.1e-21 106.7 74 70.3
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.1e-21 106.7 74 70.3
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-21 106.7 68 75.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.1e-21 106.7 74 73.0
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.9e-21 105.9 72 69.4
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.9e-21 105.9 66 75.8
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.9e-21 105.9 66 75.8
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.9e-21 105.9 78 70.5
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.5e-21 105.5 74 71.6
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.3e-21 105.1 78 70.5
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 3.3e-21 105.1 76 64.5
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.3e-21 105.1 66 77.3
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 4.3e-21 104.8 72 69.4
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 4.3e-21 104.8 78 67.9
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.3e-21 104.8 74 73.0
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.6e-21 104.4 72 69.4
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 5.6e-21 104.4 74 68.9
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.6e-21 104.4 74 73.0
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.6e-21 104.4 74 71.6
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 7.4e-21 104.0 69 72.5
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 7.4e-21 104.0 67 77.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 9.6e-21 103.6 68 73.5
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 9.6e-21 103.6 74 70.3
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 9.6e-21 103.6 74 66.2
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 9.6e-21 103.6 65 75.4
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.6e-21 103.6 65 76.9
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 9.6e-21 103.6 71 73.2
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.3e-20 103.2 64 76.6
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.3e-20 103.2 77 68.8
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.3e-20 103.2 77 68.8
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.3e-20 103.2 70 70.0
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.3e-20 103.2 72 68.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.6e-20 102.8 70 70.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.6e-20 102.8 67 73.1
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-20 102.4 68 69.1
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 3.7e-20 101.7 73 67.1
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 3.7e-20 101.7 74 66.2
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 6.2e-20 100.9 67 76.1
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.2e-20 100.9 67 73.1
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.1e-19 100.1 67 74.6
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.1e-19 100.1 67 74.6
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.8e-19 99.4 69 71.0
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.8e-19 99.4 71 70.4
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.8e-19 99.4 74 63.5
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.4e-19 99.0 68 70.6
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.4e-19 99.0 67 73.1
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.1e-19 98.6 77 63.6
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 4.0e-19 98.2 65 72.3
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 4.0e-19 98.2 68 67.6
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 5.3e-19 97.8 77 63.6
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 9.0e-19 97.1 69 69.6
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.0e-19 97.1 74 63.5
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.0e-19 97.1 74 63.5
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.0e-19 97.1 74 63.5
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 9.0e-19 97.1 67 70.1
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 9.0e-19 97.1 67 70.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 9.0e-19 97.1 66 66.7
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.2e-18 96.7 71 66.2
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 1.5e-18 96.3 67 68.7
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-18 95.5 74 62.2
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.5e-18 94.7 74 62.2
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.5e-18 94.7 74 62.2
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 4.5e-18 94.7 69 68.1
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 9.9e-18 93.6 74 62.2
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.7e-17 92.8 74 60.8
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.7e-17 92.8 74 63.5
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.9e-17 92.0 74 63.5
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.8e-17 91.7 67 68.7
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.8e-17 91.7 67 67.2
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 6.4e-17 90.9 71 60.6
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.9e-16 89.4 65 63.1
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.7e-15 85.5 69 59.4
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.7e-15 85.5 67 62.7
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.0e-14 83.6 92 52.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.9e-14 81.6 67 61.2
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 4.3e-13 78.2 61 63.9
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 4.3e-13 78.2 61 63.9
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.4e-11 72.4 61 60.7
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.2e-10 70.1 57 57.9
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-07 58.5 34 73.5
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.9e-06 55.1 34 67.6
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 5.1e-06 54.7 160 30.6


User provided reference genes

Program Settings