Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 5.1e-176 620.9 302 100.0
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.0e-160 568.5 302 94.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 8.2e-102 374.4 292 66.8
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.1e-101 374.0 286 67.5
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 5.5e-98 361.7 283 65.7
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 4.1e-93 345.5 286 64.7
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.0e-84 316.6 287 58.2
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.8e-83 312.4 287 58.2
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 3.3e-82 309.3 287 56.4
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.5e-82 307.8 287 56.4
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 2.1e-81 306.6 287 56.1
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.1e-81 306.6 287 56.1
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.1e-81 306.6 287 56.1
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 3.6e-81 305.8 287 56.4
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 8.0e-81 304.7 288 55.9
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.8e-80 303.5 287 57.5
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.3e-80 303.1 286 57.3
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 3.0e-80 302.8 289 55.7
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 4.0e-80 302.4 287 56.8
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.8e-80 301.6 287 55.7
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 2.6e-79 299.7 287 55.1
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.3e-78 297.4 289 56.4
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.2e-78 296.6 287 56.1
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 2.9e-78 296.2 287 55.4
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 6.4e-78 295.0 303 53.1
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 9.2e-77 291.2 288 55.9
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.2e-76 290.8 287 55.4
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 1.6e-76 290.4 288 57.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.9e-76 288.5 288 54.2
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.8e-76 288.1 288 54.2
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 7.8e-76 288.1 287 56.4
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 7.8e-76 288.1 287 55.4
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.0e-75 287.7 287 54.7
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.7e-75 287.0 288 53.8
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.9e-74 283.5 283 55.1
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.9e-74 283.5 287 55.4
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.5e-74 283.1 287 54.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.5e-74 283.1 287 54.0
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 5.6e-74 282.0 287 55.4
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 7.3e-74 281.6 287 53.0
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 6.8e-72 275.0 287 52.3
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 6.8e-72 275.0 286 52.8
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 5.8e-71 271.9 287 53.0
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.3e-70 270.8 282 52.1
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.7e-70 270.4 288 53.1
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 2.9e-70 269.6 285 50.5
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 4.9e-70 268.9 288 52.1
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.9e-70 268.9 287 52.3
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.4e-70 268.5 288 51.4
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 8.3e-70 268.1 287 50.9
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 1.4e-69 267.3 263 55.9
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 2.4e-69 266.5 287 51.9
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 7.0e-69 265.0 287 52.3
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 7.0e-69 265.0 287 51.9
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 9.2e-69 264.6 287 51.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 9.2e-69 264.6 288 51.7
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.0e-68 263.5 288 51.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 7.8e-68 261.5 288 50.7
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 3.9e-67 259.2 287 51.6
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 5.0e-67 258.8 288 50.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 8.6e-67 258.1 287 50.9
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 8.6e-67 258.1 292 47.3
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 8.6e-67 258.1 282 51.8
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 8.6e-67 258.1 289 50.2
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.5e-66 257.3 291 51.2
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 2.5e-66 256.5 291 49.1
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 9.5e-66 254.6 314 49.4
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.2e-65 254.2 287 52.3
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.1e-65 253.4 287 51.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 8.1e-65 251.5 287 50.9
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 8.1e-65 251.5 289 48.8
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.3e-64 250.0 313 47.6
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 5.2e-64 248.8 289 47.1
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.2e-63 247.7 290 49.7
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.6e-63 246.5 271 50.6
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 3.4e-63 246.1 288 49.7
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 3.4e-63 246.1 291 50.9
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 7.5e-63 245.0 291 48.1
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 7.5e-63 245.0 285 49.8
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 9.8e-63 244.6 278 49.6
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 2.9e-62 243.0 289 48.4
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 3.7e-62 242.7 288 50.3
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 4.9e-62 242.3 291 49.1
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 4.9e-62 242.3 294 48.3
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 6.4e-62 241.9 291 47.8
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.4e-61 240.7 292 50.0
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 3.2e-61 239.6 294 50.0
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 7.1e-61 238.4 292 50.0
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 9.2e-61 238.0 289 47.8
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 9.2e-61 238.0 264 48.5
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 2.1e-60 236.9 299 47.8
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.7e-60 236.5 296 48.3
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 4.6e-60 235.7 249 51.0
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 7.8e-60 235.0 295 48.8
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.0e-59 234.6 292 47.3
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.3e-59 234.2 295 48.8
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 2.3e-59 233.4 292 48.6
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 3.0e-59 233.0 297 49.2
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 6.6e-59 231.9 295 48.5
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 6.6e-59 231.9 296 49.0
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 6.6e-59 231.9 295 48.5
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.9e-58 230.3 295 48.1
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 4.3e-58 229.2 294 47.3
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 7.3e-58 228.4 287 47.7
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 7.3e-58 228.4 296 48.3
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 7.3e-58 228.4 291 46.7
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 9.5e-58 228.0 174 63.8
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 4.7e-57 225.7 292 47.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 6.2e-57 225.3 313 45.7
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.4e-56 224.2 283 45.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 3.4e-55 219.5 283 45.2
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 7.6e-55 218.4 289 47.1
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 9.9e-55 218.0 286 44.8
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-53 214.5 284 46.8
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.1e-53 214.5 278 45.0
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.9e-53 213.8 288 45.5
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 7.1e-53 211.8 286 43.7
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.1e-52 210.3 243 49.4
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 6.0e-52 208.8 276 48.6
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.0e-51 208.0 285 43.2
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 6.6e-51 205.3 277 44.8
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 4.7e-49 199.1 216 52.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 8.9e-48 194.9 287 42.9
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.0e-47 193.7 283 41.7
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 3.4e-47 193.0 286 42.0
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 4.9e-46 189.1 298 38.9
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.4e-45 186.8 300 40.0
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.8e-40 170.6 188 48.9
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.0e-39 167.2 290 37.2
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.9e-37 160.6 296 37.8
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.2e-36 157.9 200 45.0
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.5e-31 141.0 218 41.7
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 7.6e-31 138.7 287 31.0
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 8.4e-30 135.2 296 33.1
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.1e-26 124.8 169 44.4
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 6.9e-24 115.5 288 29.9
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.0e-24 115.2 149 44.3
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 2.6e-23 113.6 259 31.7
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.3e-22 111.3 270 25.9
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 8.4e-22 108.6 150 40.0
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 6.7e-19 99.0 93 54.8
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.7e-19 98.6 105 54.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.7e-19 98.6 73 64.4
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 5.3e-16 89.4 72 65.3
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.1e-13 81.6 259 25.1
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 7.2e-13 79.0 85 51.8
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 9.7e-10 68.6 92 43.5
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 6.3e-09 65.9 91 41.8
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.4e-08 64.7 137 31.4


User provided reference genes

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